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Группа авторов. Phytomicrobiome Interactions and Sustainable Agriculture
Table of Contents
List of Tables
List of Illustrations
Guide
Pages
Phytomicrobiome Interactions and Sustainable Agriculture
List of Contributors
Preface
About the Editors
1 Plant Root Exudate Analysis: Recent Advances and Applications
1.1 Introduction
1.2 Root Exudates Composition: Collection and Analysis
1.3 Role of Root Exudates in Shaping Rhizospheric Microbiomes
1.4 Applications of Root Exudation
1.5 Conclusion and Future Prospects
References
2 Phytoproteomics: A New Approach to Decipher Phytomicrobiome Relationships
2.1 Introduction
2.2 Phytomicrobiome
2.3 Phytomicrobiome: The Communication via Signaling
2.4 Proteomics
2.4.1 Gel‐Based Protein Separation Techniques
2.4.2 Non‐Gel Protein Separation Techniques
2.5 Analysis of Phytomicrobial Interactions Using Proteomics Approaches
2.6 Conclusion and Future Prospects
References
3 Metagenomics: An Approach to Unravel the Plant Microbiome and Its Function
3.1 Introduction
3.2 Metagenomics
3.3 Metagenomics of Plant Rhizosphere
3.4 Metagenomics of Plant Phyllosphere
3.5 Metagenomics of Plant Endosphere
3.6 In‐silico Tools for Metagenome Analysis
3.6.1 Mothur
3.6.2 Quantitative Insights into Microbial Ecology (QIIME)
3.6.3 MEta Genome Analyzer (MEGAN)
3.7 Recent Progress in Metagenomic Studies of Plant Microbiome
3.8 Conclusion and Future Prospects
References
4 Combating the Abiotic Stress Through Phytomicrobiome Studies
4.1 Introduction. 4.1.1 Abiotic Stress and Phytomicrobiome
4.1.2 Role of Signaling in Phytomicrobiome Interactions
4.2 Phytomicrobiome Signaling Compounds. 4.2.1 Root Exudates and Plant Volatiles Compounds
4.2.2 Microbial Volatile Organic Compounds
4.2.3 Quorum Sensing
4.2.4 Underground Phytomicrobiome Signaling
4.3 Mechanisms of Phytomicrobiome Associated with Abiotic Stress Tolerance
4.3.1 Drought Stress Alleviation
4.3.2 Salinity Stress Mitigation
4.3.3 Heavy Metal Toxicity
4.3.4 Low‐Temperature Stress
4.3.5 Nutrient Deficiency
4.3.6 Flooding or Water Submergence
4.4 Importance of Phytomicrobiome Engineering for Crop Stress Alleviation
4.5 Omics Strategies in Phytomicrobiome Studies
4.6 Conclusion and Future Prospects
Acknowledgments
References
5 Microbial Diversity of Phyllosphere: Exploring the Unexplored
5.1 Introduction
5.2 Origin of Phyllosphere Microflora
5.3 Tools to Study Phyllomicrobiome
5.3.1 Conventional Methods
5.3.2 Microscopic Techniques
5.3.3 First‐Generation Molecular Techniques
5.3.4 Next‐Generation Sequencing Methods
5.3.5 Omics and Bioinformatics Approaches
5.3.6 Other Molecular Methods
5.4 Biodiversity of Phyllosphere
5.5 Microbial Adaptation to Phyllosphere
5.5.1 Adaptation to Abiotic Stresses
5.5.2 Adaptation to Biotic Stresses
5.5.3 Adaptation to Nutrient Scarcity
5.6 Interaction of Phyllomicrobiota with Plants
5.6.1 Positive Interactions
5.6.2 Negative Interactions
5.7 Significance of Phyllomicrobiome Studies
5.8 Conclusion and Future Prospects
References
6 Rhizosphere Engineering: An Effective Approach for Sustainable Modern Agriculture
6.1 Introduction
6.2 Natural Plant–Microbe Interactions in Rhizosphere
6.3 Molecular Mechanisms in Plant–Microbe Interactions in Rhizosphere
6.4 Biochemical Components in Rhizosphere Signaling
6.5 Tools and Techniques in Rhizosphere Engineering
6.5.1 Stable Isotope Probing (SIP)
6.5.2 DNA Arrays
6.5.3 Fluorescence In Situ Hybridization (FISH)
6.5.4 Bioreporters
6.5.5 Genomics
6.5.6 Transcriptomics
6.5.7 Proteomics
6.5.8 Metabolomics
6.6 Rhizosphere Components Amenable to Engineering
6.6.1 Soil Modification
6.6.2 Plant Amendment
6.6.2.1 Root Exudate Modification
6.6.2.2 Root Architecture Modification
6.6.2.3 Enhancing Abiotic Stress Tolerance in Plants
6.6.2.4 Enhancing Biotic Stress Tolerance in Plants
6.6.2.5 Engineering Metabolic Pathways in Plants
6.6.3 Engineering Microbial Populations
6.7 Conclusion and Future Prospects
Acknowledgment
References
7 Plant Communication with Associated: Its Components, Composition and Role in Maintaining Plant Homeostasis
7.1 Introduction
7.2 Biofilm and Rhizospheric Interactions
7.3 Biofilm Formation at the Root Rhizosphere
7.3.1 The Components of Biofilm Matrix
7.3.2 Bacterial Quorum Sensing
7.4 Genetic Features Responsible for Bacterial Cell Adhesion to Plant System
7.4.1 Chemotaxis Motility
7.4.2 Substrate Utilization and Transport
7.4.3 Lipopolysaccharide and Membrane Proteins
7.4.4 Plant Cell Wall Modification
7.4.5 Adhesion and Biofilm Formation
7.4.6 Stress Protection
7.4.7 Bacterial Secretion System
7.4.8 Transcriptional Regulators and Sensor Proteins
7.5 Nutrient Interactions. 7.5.1 Release and Activation of Minerals
7.5.2 Nutrient Recycling
7.5.3 Nitrogen Dynamics
7.5.4 Ionic Modification
7.6 Biotic Interaction
7.6.1 Symbiosis
7.6.2 Synergy
7.6.3 Competition
7.6.4 Antagonism
7.6.5 Pathogenesis
7.7 Conclusion and Future Prospects
References
8 Phytomicrobiome: Synergistic Relationship in Bioremediation of Soil for Sustainable Agriculture
8.1 Introduction
8.2 Phytoremediation
8.2.1 Process of Phytoremediation
8.2.2 Strategies for Phytoremediation
8.3 Phytomicrobe Interactions and Rhizomediation
8.3.1 Principle of Phytomicrobiome Interaction During Rhizomediation
8.3.2 Removal of Inorganic Contaminants
8.3.3 Removal of Organic Pollutants
8.3.4 Factors Affecting Rhizomediation
8.4 Conclusion and Future Prospects
References
9 Rhizospheric Biology: Alternate Tactics for Enhancing Sustainable Agriculture
9.1 Introduction
9.2 Engineering the Rhizosphere
9.2.1 Rhizosphere and Rhizobia
9.2.2 Root Exudates: Chemical Nature and Types
9.2.3 Factors Affecting Root Exudate
9.3 Engineering Soil Microbial Populations and Plant–Microbe Interactions. 9.3.1 Microorganisms in Soil
9.3.2 Soil Modification: Altering Microbial Populations
9.4 Plant Growth‐Promoting Rhizobacteria: Mechanisms, Potential, and Usages
9.4.1 Direct Mechanisms. 9.4.1.1 Biological N2 Fixation
9.4.1.2 Phosphate Solubilization
9.4.1.3 Zinc Solubilization
9.4.1.4 Siderophore Production
9.4.1.5 Production of Phytohormones
9.4.1.6 ACC (1‐Aminocyclopropane‐1‐Carboxylate) Deaminase Activity
9.4.2 Indirect Mechanisms
9.5 Plant–Microbe Interaction
9.6 Biofertilizers and its Applications
9.7 Plant Genetic Engineering
9.8 Conclusion and Future Prospects
Acknowledgments
References
10 Application of Inorganic Amendments to Improve Soil Fertility
10.1 Introduction
10.2 Impact of Bhoochetna Movement in Southern India
10.3 Sustainable Agriculture
10.3.1 Healthy Soil and Soil Quality
10.3.2 Soil Quality
10.3.3 Soil Quality Indicator
10.3.4 Soil Quality Index
10.4 Factors to Be Considered While Selecting a Soil Amendment
10.5 Advantages of Soil Amendments
10.6 Land Modeling
10.7 Major Applications of Soil Amendments
10.7.1 Phyto‐Stabilization in Polluted or Contaminated Soils
10.7.2 Restoration of Soil
10.7.2.1 Soil Acidity/pH Soil Amendments
10.7.2.2 Mineral Soil Amendments and Conditioners
10.7.2.3 Different Types of Inorganic Amendments
10.8 Combination Strategy for Soil Quality Improvement
10.9 Conclusion and Future Prospects
References
11 Improved Plant Resistance by Phytomicrobiome Community Towards Biotic and Abiotic Stresses
11.1 Introduction
11.2 Microbes and Plants
11.2.1 Abiotic Stress Responses and Microbe‐Mediated Mitigation in Plants
11.2.2 Microbial‐Induced Response to Stresses
11.3 Response of Abiotic Response on Plant
11.3.1 Induced Systemic Tolerance (IST)
11.3.2 Metabolic Changes in Plants Induced by Microbes During Stress
11.3.2.1 Metabolic Cross‐Talk in Plants After Stress Induction
11.3.2.2 Activation of Antioxidant Mechanism
11.3.2.3 Activation of Systemically Induced Resistance
11.4 Role of Phytohormones in Increasing Abiotic and Biotic Stress Tolerance
11.5 Gene Transfer in Plants
11.6 Conclusion and Future Prospects
References
12 Bioprospecting: At the Interface of Plant and Microbial Communities
12.1 Introduction
12.2 Plant‐Associated Microbial Communities
12.3 Beneficial Effects of Plant‐Associated Microbial Communities
12.3.1 Rhizoremediation
12.3.2 Plant Growth–Promoting Rhizobacteria (PGPR)
12.3.3 Biotic and Abiotic Stress Resistance
12.3.4 Signalomics
12.4 Role of Microbial Processing (Signals) in Facilitating Plant Growth
12.5 Conclusion and Future Prospects
Acknowledgments
References
13 Advances in Omics and Bioinformatics Tools for Phyllosphere Studies
13.1 Introduction
13.2 Recent Trends and Approaches
13.3 Computing for Biology
13.4 Bioinformatics in Microbial Research
13.5 Phyllosphere Microbiome Studies Based on Genome‐Wide Association
13.6 Omics Strategies and Their Integration. 13.6.1 Metagenomics
13.6.2 Metatranscriptomics
13.6.3 Metabolomics
13.6.4 Proteomics
13.7 Conclusion and Future Prospects
References
14 Microbial Mediated Zinc Solubilization in Legumes for Sustainable Agriculture
14.1 Introduction
14.2 Chronological Events of Zinc Biology
14.3 Role of Zinc in Living System
14.3.1 Essentiality of Zinc in Humans
14.3.2 Essentiality of Zinc in Plants
14.4 Zinc Deficiency vs. Zinc Toxicity in Crop Plants
14.5 Availability of Zinc in Soil Environment
14.6 Factors Affecting Zinc Availability to Plants
14.7 Response of Legume Crops to Zinc
14.8 Microbial Mediated Zinc Solubilization in Legume Crops
14.8.1 Zinc‐Solubilizing Bacteria (ZnSB)
14.8.2 Zinc‐Solubilizing Fungi (ZnSF)
14.9 Conclusion and Future Prospects
References
15 Composition and Interconnections in Phyllomicrobiome
15.1 Introduction
15.2 Significance of Phyllospheremicrobiota
15.3 Phyllosphere Microorganisms as Plant Growth Regulator
15.3.1 Plant Growth Hormones Production by Phyllosphere Microorganisms
15.3.2 Phosphorus Solubilization by Phyllosphere Microorganisms
15.3.3 Siderophores Production by Phyllosphere Microorganisms
15.3.4 Phyllosphere Microorganisms as Biocontrol Agents Against the Phytopathogens
15.3.5 Phyllosphere Microorganisms to Reduce Biotic and Abiotic Stress
15.3.6 Synthesis of 1‐Aminocyclopropane‐1‐Carboxylate Deaminase (ACC)
15.3.7 Phyllosphere Microorganisms in Nitrogen‐Fixation
15.3.8 Frost Injury and Frost Control by Altering the Phyllosphere Microbiota
15.3.9 Remediation of Toxic Pollutants
15.3.10 Plant Probiotics
15.3.11 Role of Phyllosphere Microorganisms in Climate Change
15.3.12 Phyllosphere Microorganisms in Nutrient Yield and Increase of Plant Growth
15.3.13 Plant Hormones as Colonization Mediators of the Plant Leaves
15.4 Plant–Pathogen Interactions Mediated by Phyllosphere Microbiome. 15.4.1 Interaction Dependent on the Ionome
15.4.2 Role of Secretory Systems and Secretory Products
15.4.3 Quorum Sensing
15.5 Conclusion and Future Prospects
References
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