Computational Analysis and Deep Learning for Medical Care

Computational Analysis and Deep Learning for Medical Care
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This book discuss how deep learning can help healthcare images or text data in making useful decisions”. For that, the need of reliable deep learning models like Neural networks, Convolutional neural network, Backpropagation, Recurrent neural network is increasing in medical image processing, i.e., in Colorization of Black and white images of X-Ray, automatic machine translation, object classification in photographs / images (CT-SCAN), character or useful generation (ECG), image caption generation, etc. Hence, Reliable Deep Learning methods for perception or producing belter results are highly effective for e-healthcare applications, which is the challenge of today. For that, this book provides some reliable deep leaning or deep neural networks models for healthcare applications via receiving chapters from around the world. In summary, this book will cover introduction, requirement, importance, issues and challenges, etc., faced in available current deep learning models (also include innovative deep learning algorithms/ models for curing disease in Medicare) and provide opportunities for several research communities with including several research gaps in deep learning models (for healthcare applications).

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Группа авторов. Computational Analysis and Deep Learning for Medical Care

Table of Contents

List of Illustrations

List of Tables

Guide

Pages

Computational Analysis and Deep Learning for Medical Care. Principles, Methods, and Applications

Preface

1. CNN: A Review of Models, Application of IVD Segmentation

1.1 Introduction

1.2 Various CNN Models. 1.2.1 LeNet-5

1.2.2 AlexNet

1.2.3 ZFNet

1.2.4 VGGNet

1.2.5 GoogLeNet

1.2.6 ResNet

1.2.7 ResNeXt

1.2.8 SE-ResNet

1.2.9 DenseNet

1.2.10 MobileNets

1.3 Application of CNN to IVD Detection

1.4 Comparison With State-of-the-Art Segmentation Approaches for Spine T2W Images

1.5 Conclusion

References

2. Location-Aware Keyword Query Suggestion Techniques With Artificial Intelligence Perspective

2.1 Introduction

2.2 Related Work

2.3 Artificial Intelligence Perspective

2.3.1 Keyword Query Suggestion

2.3.1.1 Random Walk–Based Approaches

2.3.1.2 Cluster-Based Approaches

2.3.1.3 Learning to Rank Approaches

2.3.2 User Preference From Log

2.3.3 Location-Aware Keyword Query Suggestion

2.3.4 Enhancement With AI Perspective

2.3.4.1 Case Study

2.3.4.1.1 Personalization

2.3.4.1.2 Sending Adaptive Notifications

2.3.4.1.3 Analyzing

2.3.4.1.4 Reduce Labor at Routine Jobs

2.4 Architecture

2.4.1 Distance Measures

2.5 Conclusion

References

3. Identification of a Suitable Transfer Learning Architecture for Classification: A Case Study with Liver Tumors

3.1 Introduction

3.2 Related Works

3.3 Convolutional Neural Networks

3.3.1 Feature Learning in CNNs

3.3.2 Classification in CNNs

3.4 Transfer Learning

3.4.1 AlexNet

3.4.2 GoogLeNet

3.4.3 Residual Networks

3.4.3.1 ResNet-18

3.4.3.2 ResNet-50

3.5 System Model

3.6 Results and Discussions. 3.6.1 Dataset

3.6.2 Assessment of Transfer Learning Architectures

3.7 Conclusion

References

4. Optimization and Deep Learning–Based Content Retrieval, Indexing, and Metric Learning Approach for Medical Images

4.1 Introduction

4.2 Related Works

4.3 Proposed Method

4.3.1 Input Dataset

4.3.2 Pre-Processing

4.3.3 Combination of DCNN and CFML

4.3.4 Fine Tuning and Optimization

4.3.5 Feature Extraction

4.3.6 Localization of Abnormalities in MRI and CT Scanned Images

4.4 Results and Discussion

4.4.1 Metric Learning

4.4.2 Comparison of the Various Models for Image Retrieval

4.4.3 Precision vs. Recall Parameters Estimation for the CBIR

4.4.4 Convolutional Neural Networks–Based Landmark Localization

4.5 Conclusion

References

5. Deep Learning for Clinical and Health Informatics

5.1 Introduction

5.1.1 Deep Learning Over Machine Learning

5.2 Related Work

5.3 Motivation

5.4 Scope of the Work in Past, Present, and Future

5.5 Deep Learning Tools, Methods Available for Clinical, and Health Informatics

5.6 Deep Learning: Not-So-Near Future in Biomedical Imaging

5.6.1 Types of Medical Imaging

5.6.2 Uses and Benefits of Medical Imaging

5.7 Challenges Faced Toward Deep Learning Using in Biomedical Imaging

5.7.1 Deep Learning in Healthcare: Limitations and Challenges

5.8 Open Research Issues and Future Research Directions in Biomedical Imaging (Healthcare Informatics)

5.9 Conclusion

References

6. Biomedical Image Segmentation by Deep Learning Methods

6.1 Introduction

6.2 Overview of Deep Learning Algorithms

6.2.1 Deep Learning Classifier (DLC)

6.2.2 Deep Learning Architecture

6.3 Other Deep Learning Architecture. 6.3.1 Restricted Boltzmann Machine (RBM)

6.3.2 Deep Learning Architecture Containing Autoencoders

6.3.3 Sparse Coding Deep Learning Architecture

6.3.4 Generative Adversarial Network (GAN)

6.3.5 Recurrent Neural Network (RNN)

6.4 Biomedical Image Segmentation

6.4.1 Clinical Images

6.4.2 X-Ray Imaging

6.4.3 Computed Tomography (CT)

6.4.4 Magnetic Resonance Imaging (MRI)

6.4.5 Ultrasound Imaging (US)

6.4.6 Optical Coherence Tomography (OCT)

6.5 Conclusion

References

7. Multi-Lingual Handwritten Character Recognition Using Deep Learning

7.1 Introduction

7.2 Related Works

7.3 Materials and Methods

7.4 Experiments and Results

7.4.1 Dataset Description. 7.4.1.1 Handwritten Math Symbols

7.4.1.2 Bangla Handwritten Character Dataset

7.4.1.3 Devanagari Handwritten Character Dataset

7.4.2 Experimental Setup

7.4.3 Hype-Parameters

7.4.3.1 English Model

7.4.3.2 Hindi Model

7.4.3.3 Bangla Model

7.4.3.4 Math Symbol Model

7.4.3.5 Combined Model

7.4.4 Results and Discussion

7.4.4.1 Performance of Uni-Language Models

7.4.4.2 Uni-Language Model on English Dataset

7.4.4.3 Uni-Language Model on Hindi Dataset

7.4.4.4 Uni-Language Model on Bangla Dataset

7.4.4.5 Uni-Language Model on Math Symbol Dataset

7.4.4.6 Performance of Multi-Lingual Model on Combined Dataset

7.5 Conclusion

References

8. Disease Detection Platform Using Image Processing Through OpenCV

8.1 Introduction

8.1.1 Image Processing

8.2 Problem Statement. 8.2.1 Cataract

8.2.1.1 Causes

8.2.1.2 Types of Cataracts

8.2.1.3 Cataract Detection

8.2.1.4 Treatment

8.2.1.5 Prevention

8.2.1.6 Methodology

8.2.1.6.1 Pre-Processing

8.2.1.6.2 Feature Extraction

8.2.1.6.3 Area Extraction

8.2.1.6.4 Decision Making

8.2.2 Eye Cancer

8.2.2.1 Symptoms

8.2.2.2 Causes of Retinoblastoma

8.2.2.3 Phases

8.2.2.4 Spreading of Cancer

8.2.2.5 Diagnosis

8.2.2.6 Treatment

8.2.2.6.1 Various Treatment Techniques

8.2.2.7 Methodology

8.2.2.7.1 Pre-Processing

8.2.2.7.2 Morphological Transformations

8.2.2.7.3 Segmenting Tumor

8.2.3 Skin Cancer (Melanoma)

8.2.3.1 Signs and Symptoms

8.2.3.2 Stages

8.2.3.3 Causes of Melanoma

8.2.3.4 Diagnosis

8.2.3.5 Treatment

8.2.3.6 Methodology

8.2.3.6.1 Pre-Processing

8.2.3.6.2 Analyzing the Image

8.2.3.6.3 Identification and Classification

8.2.3.6.3.1 ABCD Rule

8.2.3.7 Asymmetry

8.2.3.8 Border

8.2.3.9 Color

8.2.3.10 Diameter Detection

8.2.3.11 Calculating TDS (Total Dermoscopy Score)

8.2.3.11.1 TDS Formula

8.3 Conclusion

8.4 Summary

References

9. Computer-Aided Diagnosis of Liver Fibrosis in Hepatitis Patients Using Convolutional Neural Network

9.1 Introduction

9.2 Overview of System

9.3 Methodology

9.3.1 Dataset

9.3.2 Pre-Processing

9.3.3 Feature Extraction

9.3.4 Feature Selection and Normalization

9.3.5 Classification Model

9.4 Performance and Analysis

9.5 Experimental Results

9.6 Conclusion and Future Scope

References

10. Lung Cancer Prediction in Deep Learning Perspective

10.1 Introduction

10.2 Machine Learning and Its Application. 10.2.1 Machine Learning

10.2.2 Different Machine Learning Techniques

10.2.2.1 Decision Tree

10.2.2.2 Support Vector Machine

10.2.2.3 Random Forest

10.2.2.4 K-Means Clustering

10.3 Related Work

10.4 Why Deep Learning on Top of Machine Learning?

10.4.1 Deep Neural Network

10.4.2 Deep Belief Network

10.4.3 Convolutio nal Neural Network

10.5 How is Deep Learning Used for Prediction of Lungs Cancer? 10.5.1 Proposed Architecture

10.5.1.1 Pre-Processing Block

10.5.1.2 Segmentation

10.5.1.3 Classification

10.6 Conclusion

References

11. Lesion Detection and Classification for Breast Cancer Diagnosis Based on Deep CNNs from Digital Mammographic Data

11.1 Introduction

11.2 Background. 11.2.1 Methods of Diagnosis of Breast Cancer

11.2.2 Types of Breast Cancer

11.2.3 Breast Cancer Treatment Options

11.2.4 Limitations and Risks of Diagnosis and Treatment Options. 11.2.4.1 Limitation of Diagnosis Methods

11.2.4.2 Limitations of Treatment Plans

11.2.5 Deep Learning Methods for Medical Image Analysis: Tumo r Classification

11.3 Methods. 11.3.1 Digital Repositories

11.3.1.1 DDSM Database

11.3.1.2 AMDI Database

11.3.1.3 IRMA Database

11.3.1.4 BreakHis Database

11.3.1.5 MIAS Database

11.3.2 Data Pre-Processing

11.3.2.1 Advantages of Pre-Processing Images

11.3.3 Convolutional Neural Networks (CNNs)

11.3.3.1 Architecture of CNN

11.3.4 Hyper-Parameters

11.3.4.1 Number of Hidden Layers

11.3.4.2 Dropout Rate

11.3.4.3 Activation Function

11.3.4.4 Learning Rate

11.3.4.5 Number of Epochs

11.3.4.6 Batch Size

11.3.5 Techniques to Improve CNN Performance. 11.3.5.1 Hyper-Parameter Tuning

11.3.5.2 Augmenting Images

11.3.5.3 Managing Over-Fitting and Under-Fitting

11.4 Application of Deep CNN for Mammography. 11.4.1 Lesion Detection and Localization

11.4.2 Lesion Classification

11.5 System Model and Results. 11.5.1 System Model

11.5.2 System Flowchart. 11.5.2.1 MIAS Database

11.5.2.2 Unannotated Images

11.5.3 Results. 11.5.3.1 Distribution and Processing of Dataset. 11.5.3.1.1 MIAS Database

11.5.3.1.2 Unannotated Labeled Images

11.5.3.2 Training of the Model

11.5.3.3 Prediction of Unannotated Images

11.6 Research Challenges and Discussion on Future Directions

11.7 Conclusion

References

12. Health Prediction Analytics Using Deep Learning Methods and Applications

12.1 Introduction

12.2 Background

12.3 Predictive Analytics

12.4 Deep Learning Predictive Analysis Applications. 12.4.1 Deep Learning Application Model to Predict COVID-19 Infection

12.4.2 Deep Transfer Learning for Mitigating the COVID-19 Pandemic

12.4.3 Health Status Prediction for the Elderly Based on Machine Learning

12.4.4 Deep Learning in Machine Health Monitoring

12.5 Discussion

12.6 Conclusion

References

13. Ambient-Assisted Living of Disabled Elderly in an Intelligent Home Using Behavior Prediction—A Reliable Deep Learning Prediction System

13.1 Introduction

13.2 Activities of Daily Living and Behavior Analysis

13.3 Intelligent Home Architecture

13.4 Methodology. 13.4.1 Record the Behaviors Using Sensor Data

13.4.2 Classify Discrete Events and Relate the Events Using Data Analysis Algorithms

13.4.3 Construct Behavior Dictionaries for Flexible Event Intervals Using Deep Learning Concepts

13.4.4 Use the Dictionary in Modeling the Behavior Patterns Through Prediction Techniques

13.4.5 Detection of Deviations From Expected Behaviors Aiding the Automated Elderly Monitoring Based on Decision Support Algorithm Systems

13.5 Senior Analytics Care Model

13.6 Results and Discussions

13.7 Conclusion

Nomenclature

References

14. Early Diagnosis Tool for Alzheimer’s Disease Using 3D Slicer

14.1 Introduction

14.2 Related Work

14.3 Existing System

14.4 Proposed System

14.4.1 Usage of 3D Slicer

14.5 Results and Discussion

14.6 Conclusion

References

15. Deep Learning for Medical Healthcare: Issues, Challenges, and Opportunities

15.1 Introduction

15.2 Related Work

15.3 Development of Personalized Medicine Using Deep Learning: A New Revolution in Healthcare Industry

15.3.1 Deep Feedforward Neural Network (DFF)

15.3.2 Convolutional Neural Network

15.3.3 Recurrent Neural Network (RNN)

15.3.4 Long/Short-Term Memory (LSTM)

15.3.5 Deep Belief Network (DBN)

15.3.6 Autoencoder (AE)

15.4 Deep Learning Applications in Precision Medicine

15.4.1 Discovery of Biomarker and Classification of Patient

15.4.2 Medical Imaging

15.5 Deep Learning for Medical Imaging

15.5.1 Medical Image Detection

15.5.1.1 Pathology Detection

15.5.1.2 Detection of Image Plane

15.5.1.3 Anatomical Landmark Localization

15.5.2 Medical Image Segmentation

15.5.2.1 Supervised Algorithms

15.5.2.2 Semi-Supervised Algorithms

15.5.3 Medical Image Enhancement

15.5.3.1 Two-Dimensional Super-Resolution Techniques

15.5.3.2 Three-Dimensional Super-Resolution Techniques

15.6 Drug Discovery and Development: A Promise Fulfilled by Deep Learning Technology

15.6.1 Prediction of Drug Properties

15.6.2 Prediction of Drug-Target Interaction

15.7 Application Areas of Deep Learning in Healthcare

15.7.1 Medical Chatbots

15.7.2 Smart Health Records

15.7.3 Cancer Diagnosis

15.8 Privacy Issues Arising With the Usage of Deep Learning in Healthcare

15.8.1 Private Data

15.8.2 Privacy Attacks

15.8.2.1 Evasion Attack

15.8.2.2 White-Box Attack

15.8.2.3 Black-Box Attack

15.8.2.4 Poisoning Attack

15.8.3 Privacy-Preserving Techniques

15.8.3.1 Differential Privacy With Deep Learning

15.8.3.2 Homomorphic Encryption (HE) on Deep Learning

15.8.3.3 Secure Multiparty Computation on Deep Learning

15.9 Challenges and Opportunities in Healthcare Using Deep Learning

15.10 Conclusion and Future Scope

References

16. A Perspective Analysis of Regularization and Optimization Techniques in Machine Learning

16.1 Introduction

16.1.1 Data Formats

16.1.1.1 Structured Data

16.1.1.2 Unstructured Data

16.1.1.3 Semi-Structured Data

16.1.2 Beginning With Learning Machines

16.1.2.1 Perception

16.1.2.2 Artificial Neural Network

16.1.2.3 Deep Networks and Learning

16.1.2.4 Model Selection, Over-Fitting, and Under-Fitting

16.2 Regularization in Machine Learning

16.2.1 Hamadard Conditions

16.2.2 Tikhonov Generalized Regularization

16.2.3 Ridge Regression

16.2.4 Lasso—L1 Regularization

16.2.5 Dropout as Regularization Feature

16.2.6 Augmenting Dataset

16.2.7 Early Stopping Criteria

16.3 Convexity Principles

16.3.1 Convex Sets

16.3.1.1 Affine Set and Convex Functions3

16.3.1.2 Properties of Convex Functions

16.3.1.2.1 Constraint Handling

16.3.1.2.2 No Local Minima

16.3.1.2.3 Lagrange Function

16.3.2 Optimization and Role of Optimizer in ML

16.3.2.1 Gradients-Descent Optimization Methods

16.3.2.2 Non-Convexity of Cost Functions

16.3.2.3 Basic Maths of SGD

16.3.2.4 Saddle Points

16.3.2.5 Gradient Pointing in the Wrong Direction

16.3.2.6 Momentum-Based Optimization

16.4 Conclusion and Discussion

References

17. Deep Learning-Based Prediction Techniques for Medical Care: Opportunities and Challenges

17.1 Introduction

17.2 Machine Learning and Deep Learning Framework

17.2.1 Supervised Learning

17.2.2 Unsupervised Learning

17.2.3 Reinforcement Learning

17.2.4 Deep Learning

17.3 Challenges and Opportunities

17.3.1 Literature Review

17.4 Clinical Databases—Electronic Health Records

17.5 Data Analytics Models—Classifiers and Clusters

17.5.1 Criteria for Classification

17.5.1.1 Probabilistic Classifier

17.5.1.2 Support Vector Machines (SVMs)

17.5.1.3 K-Nearest Neighbors

17.5.2 Criteria for Clustering

17.5.2.1 K-Means Clustering

17.5.2.2 Mean Shift Clustering

17.6 Deep Learning Approaches and Association Predictions

17.6.1 G-HR: Gene Signature–Based HRF Cluster

17.6.1.1 G-HR Procedure

17.6.2 Deep Learning Approach and Association Predictions

17.6.2.1 Deep Learning Approach

17.6.2.2 Intelligent Human Disease-Gene Association Prediction Technique (IHDGAP)

17.6.2.3 Convolution Neural Network

17.6.2.4 Disease Semantic Similarity

17.6.2.5 Computation of Scoring Matrix

17.6.3 Identified Problem

17.6.4 Deep Learning–Based Human Diseases Pattern Prediction Technique for High-Dimensional Human Diseases Datasets (ECNN-HDPT)

17.6.5 Performance Analysis

17.7 Conclusion

17.8 Applications

References

18. Machine Learning and Deep Learning: Open Issues and Future Research Directions for the Next 10 Years

18.1 Introduction

18.1.1 Comparison Among Data Mining, Machine Learning, and Deep Learning

18.1.2 Machine Learning

18.1.2.1 Importance of Machine Learning in Present Business Scenario

18.1.2.2 Applications of Machine Learning

18.1.2.3 Machine Learning Methods Used in Current Era

18.1.3 Deep Learning

18.1.3.1 Applications of Deep Learning

18.1.3.2 Deep Learning Techniques/Methods Used in Current Era

18.2 Evolution of Machine Learning and Deep Learning

18.3 The Forefront of Machine Learning Technology

18.3.1 Deep Learning

18.3.2 Reinforcement Learning

18.3.3 Transfer Learning

18.3.4 Adversarial Learning

18.3.5 Dual Learning

18.3.6 Distributed Machine Learning

18.3.7 Meta Learning

18.4 The Challenges Facing Machine Learning and Deep Learning

18.4.1 Explainable Machine Learning

18.4.2 Correlation and Causation

18.4.3 Machine Understands the Known and is Aware of the Unknown

18.4.4 People-Centric Machine Learning Evolution

18.4.5 Explainability: Stems From Practical Needs and Evolves Constantly

18.5 Possibilities With Machine Learning and Deep Learning

18.5.1 Possibilities With Machine Learning

18.5.1.1 Lightweight Machine Learning and Edge Computing

18.5.1.2 Quantum Machine Learning

18.5.1.3 Quantum Machine Learning Algorithms Based on Linear Algebra

18.5.1.4 Quantum Reinforcement Learning

18.5.1.5 Simple and Elegant Natural Laws

18.5.1.6 Improvisational Learning

18.5.1.7 Social Machine Learning

18.5.2 Possibilities With Deep Learning. 18.5.2.1 Quantum Deep Learning

18.6 Potential Limitations of Machine Learning and Deep Learning

18.6.1 Machine Learning

18.6.2 Deep Learning

18.7 Conclusion

Acknowledgement

Contribution/Disclosure

References

Index

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Third layer: Is a complete inception module. The previous layer’s output is 28 × 28 with 192 filters and there will be four branches originating from the previous layer. The first branch uses 1 × 1 convolution kernels with 64 filters and ReLU, generates 64, 28 × 28 feature map; the second branch uses 1 × 1 convolution with 96 kernels (ReLU) before 3 × 3 convolution operation (with 128 filters), generating 128 × 28 × 28 feature map; the third branch use 1 × 1 convolutions with 16 filters (using ReLU) of 32 × 5 × 5 convolution operation, generating 32 × 28 × 28 feature map; the fourth branch contains 3 × 3 max pooling layer and a 1 × 1 convolution operation, generating 32 × 28 × 28 feature maps. And it is followed by concatenation of the generated feature maps that provide an output of 28 × 28 feature map with 258 filters.

The fourth layer is inception module. Input image is 28 × 28 × 256. The branches include 1 × 1 × 128 and ReLU, 1 × 1 × 128 as reduce before 3 × 3 × 192 convolutional operation, 1 × 1 × 32 as reduce before 5 × 5 × 96 convolutional operation, 3 × 3 max pooling with padding 1 before 1 × 1 × 64. The output is 28 × 28 × 128, 28 × 28 × 192, 28 × 28 × 96, and 28 × 28 × 64, respectively for each branch. The final output is 28 × 28 × 480. Table 1.6 shows the parameters of GoogleNet.

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