Magnetic Resonance Microscopy

Magnetic Resonance Microscopy
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Magnetic Resonance Microscopy Explore the interdisciplinary applications of magnetic resonance microscopy in this one-of-a-kind resource In Magnetic Resonance Microscopy: Instrumentation and Applications in Engineering, Life Science and Energy Research, a team of distinguished researchers delivers a comprehensive exploration of the use of magnetic resonance microscopy (MRM) and similar techniques in an interdisciplinary milieux. Opening with a section on hardware and methodology, the book moves on to consider developments in the field of mobile nuclear magnetic resonance. Essential processes, including filtration, multi-phase flow and transport, and a wide range of systems – from biomarkers via single cells to plants and biofilms – are discussed next. After a fulsome treatment of MRM in the field of energy research, the editors conclude the book with a chapter extoling the virtues of a holistic treatment of theory and application in MRM. Magnetic Resonance Microscopy: Instrumentation and Applications in Engineering, Life Science and Energy Research also includes: A thorough introduction to recent developments in magnetic resonance microscopy hardware and methods, including ceramic coils for MR microscopy Comprehensive explorations of applications in chemical engineering, including ultra-fast MR techniques to image multi-phase flow in pipes and reactors Practical discussions of applications in the life sciences, including MRI of single cells labelled with super paramagnetic iron oxide nanoparticles In-depth examinations of new applications in energy research, including spectroscopic imaging of devices for electrochemical storage Perfect for practicing scientists from all fields, Magnetic Resonance Microscopy: Instrumentation and Applications in Engineering, Life Science and Energy Research is an ideal resource for anyone seeking a one-stop guide to magnetic resonance microscopy for engineers, life scientists, and energy researchers.

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Группа авторов. Magnetic Resonance Microscopy

Magnetic Resonance Microscopy. Instrumentation and Applications in Engineering, Life Science, and Energy Research

Contents

List of Illustrations

List of Tables

Guide

Pages

Foreword

Preface

1 Microengineering Improves MR Sensitivity

1.1 Introduction

1.1.1 Comparative Electromagnetic Radiation Imaging

1.1.2 Limit of Detection

1.1.3 Limit of Imaging Resolution

1.2 High Resolution From Enhanced Sensitivity. 1.2.1 Coil Miniaturization

1.2.2 The Lenz Lens: A Tool to Boost Sensitivity

1.3 MR Microscopy and Neurotechnologies

1.3.1 Tissue Scaffolds and Implants

1.3.2 The Case of Epileptogenesis: Ex Situ Brain Slices and in Situ Histology

1.4 Augmented MR Microscopy

1.4.1 Perfusion

1.4.2 Electrochemistry

1.4.3 Hyperpolarization

1.5 Conclusions

References

Notes

2 Ceramic Coils for MR Microscopy

2.1 Introduction

2.2 State of the Art

2.3 Modeling and Design Guidelines

2.3.1 Dielectric Cylindrical Resonator Modes

2.3.2 Power Loss Contributions in a Ceramic Probe

2.3.3 SNR Estimation

2.3.4 Mode Frequency

2.3.4 Application: Design Guidelines

2.3.5 Validation

2.4 MRM with Ceramic Coils

2.4.1 Practical Considerations and Experimental Setup

2.4.2 Performance

2.4.3 Dual Ceramic Coils

2.5 Conclusion and Future Prospects

References

3 Portable Brain Scanner Technology for Use in Emergency Medicine

3.1 Where Would You Use a Portable or Small Footprint Magnetic Resonance Imager?

3.2 Rethinking System-level Approaches

3.3 Three Levels of POC Use

3.3.1 Brain MRI in an “Easy-to-Site Suite”

3.3.2 Brain MRI with a Portable Device

3.3.3 Brain MRI as a Monitoring Device

3.4 Clinical Use Scenarios of “Easy-to-Site” POC, and Monitoring MR Devices

3.4.1 ED and ICU

3.4.2 Acute Stroke Care

3.4.3 Assessing Pediatric Hydrocephalus in the Developing World

3.4.3 Mass-effect Monitor in ED or ICU Setting

3.4.4 Neonatal Intensive Care Unit (NICU)

3.5 Technological Approaches to POC and/or Portable MRI

3.5.1 Magnet Designs. 3.5.1.1 Advances in Cryogenics for Supercon Magnets

3.5.1.2 Superconducting Solenoid Designs for the Easy-to-Site Suite

3.5.1.3 Shorter Supercon Magnets from Relaxed Homogeneity

3.5.1.4 Permanent Magnets for Portable MRI

3.5.1.5 Halbach Arrays for Portable MRI

3.5.1.6 Other Types of Permanent Magnet Arrays

3.5.2 Other Technological Challenges

3.5.2.1 Image Encoding in an Inhomogeneous Field

3.5.2.2 Limited Frequency Bandwidth of Tuned Radiofrequency Coils

3.5.2.3 External EMI Removal (Eliminating the Shielded Room)

3.6 Conclusions

Acknowledgments

References

4 Technology for Ultrahigh Field Imaging

4.1 Introduction

4.2 Neuroimaging and UHF

4.3 UHF and fMRI

4.4 SNR, Increasing Magnetic Fields, and Dense Arrays

4.5 High Performance Gradients

4.6 Imaging the Human Torso at UHF

4.7 Conclusions

Acknowledgments

References

Notes

5 Sweep Imaging with Fourier Transformation (SWIFT)

5.1 Introduction

5.1.1 Sweep Excitation

5.1.2 Tailored Excitation Profile

5.2 The Original Gapped SWIFT Technique and Its Components

5.2.1 View Ordering and Silent MRI

5.2.2 SWIFT-specific Artifact and Its Correction

5.3 SWIFT Utilization

5.3.1 MP Schemes

5.3.1.1 Look-Locker Sequence

5.3.2 Spectroscopic SWIFT

5.4 SWIFT Variations. 5.4.1 Gradient-modulated SWIFT

5.4.2 Multi-band SWIFT

5.4.3 Continuous SWIFT

5.5 Applications and Outlook

Acknowledgments

References

6 Methods Based on Solution Flow, Improved Detection, and Hyperpolarization for Enhanced Magnetic Resonance

6.1 Introduction

6.2 Basics of the Methods to Increase NMR Sensitivity. 6.2.1 Spin Hyperpolarization

6.2.2 Microcoils and Cryocoils

6.2.3 Solution Flow

6.3 MRI Methods Dedicated to Hyperpolarization

6.4 Combining Methods to Gain Sensitivity. 6.4.1 Flow and Micro-detection

6.4.2 Cryocoils and Flow

6.4.3 Hyperpolarization and Micro-detection

6.4.3.1 Toward Integrated Mini-devices for Hyperpolarization?

6.4.3.2 A Further Sensitivity Gain in the Nonlinear Regime

6.5 Efficient Dissolution of Hyperpolarized Species

6.5.1 Use of Dissolved Noble Gases

6.5.2 Use of Dissolved Parahydrogen

6.5.3 Dissolution-DNP

6.6 Current Status and Perspectives

Acknowledgments

References

7 Advances and Adventures with Mobile NMR

7.1 Introduction

7.2 Compact Stray-field NMR Sensors

7.3 Car Tires

7.4 Violins

7.5 Heritage Buildings

7.5.1 The Mackintosh Library

7.5.2 In Search of a Hidden Wall Painting

7.5.3 Covered Roman Frescoes

7.6 Biofilms in Yellowstone National Park

7.7 Outlook

Acknowledgments

References

8 Ultrafast MR Techniques to Image Multi-phase Flows in Pipes and Reactors Bubble Burst Hydrodynamics

8.1 Introduction

8.1.1 The Motivation for Ultrafast MR Imaging in Chemical Engineering

8.1.2 Time-averaged Approach

8.1.3 Ultrafast Imaging for Engineering Applications

8.1.3.1 Ultrafast Image Acquisition Protocols

8.1.3.2 Ultrafast Imaging with Reduced Data Acquisition and Compressed Sensing Reconstruction

8.2 Bubble Burst Hydrodynamics Captured with MR Velocimetry

8.2.1 Introduction to Bubble Burst Hydrodynamics

8.2.2 Materials and Methods

8.2.3 Reconstruction Technique

8.2.4 Results and Discussion

8.2.4.1 Bubble Burst Velocity Maps

8.3 Conclusions

Acknowledgments

References

9 Magnetic Resonance Imaging of Membrane Filtration Processes

9.1 Introduction to Membranes and Membrane Processes. 9.1.1 Membranes

9.1.2 Membrane Module and Membrane Processes

9.1.3 Performance Decreasing Phenomena in Membrane Processes and Countermeasures

9.1.4 Magnetic Resonance Imaging in Membrane Processes

9.2 Oil–Water Emulsions and Silica Suspensions in Polymeric Hollow Fiber Modules

9.3 Sodium Alginate Solutions in Ceramic Hollow Fiber Modules

9.4 Sodium Alginate Solutions and Silica Suspensions in Polymeric Multichannel Membrane Modules

9.5 Measures Preventing Concentration Polarization and Fouling

9.6 Analysis of Medical Products

9.6.1 Hemodialysis – Flow Distribution in Hemodialyzers

9.6.2 Hemodialysis – Flow Distribution in Endotoxin Adsorbers

9.6.3 Connectors – Flow Distribution in Medical Connectors

9.7 Analysis of Forward and Reverse Osmosis Modules

9.8 Conclusion and Alternative Techniques

References

10 Whither NMR of Biofilms?

10.1 Introduction

10.2 Pulsed Gradient Spin Echo NMR and Porous Media Design

10.3 19F NMR Oxymetry

10.4 MR Elastography and Rheo-NMR

10.5 Singlet NMR Diffusion

10.6 Heteronuclear NMR and MRI

10.7 NMR and MRI on Electrochemical Active Biofilm Systems

10.8 Conclusions

References

11 MRI of Transport and Flow in Plants and Foods

11.1 Introduction

11.2 Transport and Flow in Plants and into Fruits

11.2.1 Long-distance Water Flow

11.2.2 Transport and Distribution of Metabolites

11.3 Transport in Foods: Water and Oil Migration. 11.3.1 Water and Oil Migration During Food Preparation

11.3.2 Water and Oil Migration During Shelf Life

11.4 MRI of Flow in Foods

11.4.1 Shear-induced Spatial Heterogeneities Under Transient Flow Conditions

11.4.2 Flow in Granular and Soft Food Materials

11.5 Perspectives

References

12 MRI of Single Cells Labeled with Superparamagnetic Iron Oxide Nanoparticles

12.1 Introduction

12.2 Strategies for Detecting Cells by MRI

12.3 Theoretical Considerations on Image Contrast

12.3.1 Dipolar Fields and Image Contrast

12.4 Cell Labeling

12.5 History of Single-cell MRI

12.6 Moving Cells. 12.6.1 Impact of MR Data Acquisition

12.7 Validation Methods for Labeled Cell Detection

12.8 Summary

References

13 Imaging Biomarkers for Alzheimer’s Disease Using Magnetic Resonance Microscopy

13.1 Introduction. 13.1.1 Motivation

13.1.2 Challenges Associated with Quantifying MRI Brain Biomarkers in Mouse Models

13.1.3 Animal and Specimen Preparation for Magnetic Resonance Microscopy

13.1.4 AD Biomarkers

13.2 Morphometry. 13.2.1 General Principles

13.2.2 In Vivo Morphometry

13.2.3 Ex Vivo Morphometry

13.2.4 Challenges

13.3 Diffusion-weighted Imaging and Analysis

13.3.1 MR Estimates of Tissue Microstructure

13.3.2 Microstructural Changes in Mouse Models of Familial AD

13.3.3 Connectivity Changes in Mouse Models of Familial AD

13.3.4 Accelerated Imaging Protocols Using Compressed Sensing

13.4 Integrating Multivariate Biomarkers Improves the Ability to Predict Cognition

13.4.1 Integrative Analyses

Summary

Acknowledgments

References

14 NMR Imaging of Slow Flows in the Root–Soil Compartment

14.1 Introduction

14.2 Transport in the Soil–Plant–Atmosphere Continuum

14.3 Root–Soil Diagnostics. 14.3.1 Geophysical Methods

14.3.2 X-ray Computer Tomography and Neutron Imaging

14.3.3 MRI in Combination with Tracer Tracking

14.3.4 MRI Velocity Mapping. 14.3.4.1 Above-ground Parts of Plants

14.3.4.2 Below-ground parts of plants

14.4 Conclusions

References

Notes

15 Magnetic Resonance Studies of Water in Wood Materials

15.1 Introduction

15.2 Basic Wood Anatomy

15.2.1 Macrostructural Wood Anatomy

15.2.2 Microstructural Wood Anatomy

15.3 MR Studies of Water States in Wood

15.3.1 Bound and Free Water vs. Cell Wall and Cell Lumen Water in Wood

15.3.2 MR Studies of MC in Wood

15.3.3 MR Studies of Water Migration in Wood

15.4 MR Studies of the Pore Space in Wood

15.4.1 Relaxation Time Distribution for Wood Pore Studies

15.4.2 MR Cryoporometry Studies of Water in Wood Pores

15.5 Conclusions

Acknowledgments

References

16 In Situ Spectroscopic Imaging of Devices for Electrochemical Storage with Focus on the Solid Components

16.1 Introduction

16.2 Electrochemical Storage

16.2.1 Lithium-ion Batteries

16.2.2 Electrochemical Double-Layer Capacitors

16.2.3 Electrochemical Characterization

16.2.4 Electrochemical Devices in Practice

16.3 Opportunities and Challenges for in Situ MR Spectroscopic Imaging of Electrochemical Storage Devices

16.3.1 General Experimental Setup

16.3.2 Opportunities

16.3.3 Experimental Challenges

16.3.4 Quantitative Measurements

16.3.5 Time Resolution and Sensitivity

16.4 Electrochemical Cell and Probe Designs for in Situ Spectroscopic Imaging

16.4.1 Pouch Cells

16.4.2 Plastic Capsule/Cartridge Cells

16.4.3 Swagelok Cells

16.4.4 Promising Designs

16.5 Classical Chemical Shift Imaging for the Solid Parts of Batteries

16.5.1 Signal Lifetime

16.5.2 Phase-encoded Chemical Shift 1D Imaging Sequence

16.5.3 Metallic Electrode

16.5.4 Solid Electrolyte

16.6 A Specific Sequence for Paramagnetic Electrodes: S-ISIS

16.6.1 1D-ISIS Sequence for Localized Spectroscopy

16.6.2 Slice Selection

16.6.3 Scanning ISIS

16.6.4 S-ISIS Study of Lithiation Fronts in the Solid Electrodes of the Battery

16.7 Electron Paramagnetic Resonance Spectroscopic Imaging for Electrochemical Storage

16.8 Conclusions

References

17 Magnetic Field Map Measurements and Operando NMR/MRI as a Diagnostic Tool for the Battery Condition

17.1 Batteries – Essential Components with Complex Geometries

17.2 Magnetic Resonance Techniques Applied to Research Cells

17.3 The Effect of Conductive Materials on Radiofrequency Propagation

17.4 MRI on Commercial Batteries

17.5 Expanding the Method to Current Density Sensing

17.6 Mapping Oscillating Magnetic Fields Around Battery Cells

17.7 Employing Magnetometry to Investigate Commercial Batteries

17.8 Measuring NMR Signals From the Inside of a Fully Enclosed Commercial Cell

17.9 Conclusions and Outlook

Acknowledgments

References

18 Magnetic Resonance Imaging of Sodium-Ion Batteries

18.1 Introduction

18.2 Experimental

18.3 Results. 18.3.1 Distribution and Evolution of Sodium Species

18.3.2 Metallic Sodium Formation

18.4 Conclusions

References

19 The Fun of Applications – a Perspective

19.1 Introduction

19.2 List 1: Areas of MR Research Motivated by Well-logging Applications

19.3 List 2: Further Research Areas Motivated by MR Well-logging Applications

19.4 Conclusions

Acknowledgment

References

Index

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Edited by

Sabina Haber-Pohlmeier

.....

Incubator systems have been implemented for improved tissue slice MR microscopy. To enable long-term microscopy of a biologically viable tissue, incubator systems must not only manage perfusion but also gas concentration and temperature control. Flint et al. [48]. developed such an incubator system compatible with a 600-MHz NMR spectrometer. They demonstrated diffusion-weighted imaging of rat cortical slices with 31.25 µm isotropic resolution (1.5 h measurement time) over 21 h. The challenge for soft tissue incubation in vertical bore NMR systems is preventing tissue deformation caused by gravity. This can be addressed, for example, by physically clamping the tissue taking care not to unnecessarily perturb the tissue function. This challenge can be circumvented by ensuring gravity is perpendicular to the tissue surface, easily achieved in horizontal bore systems. Kamberger et al. [35] implemented an incubator for mouse brain slice imaging under this condition, with the added feature of a LL for magnetic field-focusing and improved SNR [33]. Using a 9.4-T MRI system, T1-weighted images could be obtained in 8 min with 0.5 mm slice thickness and in-plane resolution of 0.1 × 0.1 mm, importantly, with a factor of 10 improved SNR yielded by the LL (Figure 1.7). In a clever use of capillary forces, tissue–air interfaces perpendicular to B0 were avoided by allowing the perfusion medium to slightly overfill the tissue chamber thereby eliminating magnetic susceptibility-induced imaging artifacts.

The microfluidic LOC and micro total analysis system (µTAS) communities have recognized the added value of implementing electro-manipulation capabilities. From the perspective of biological samples, the electrical degree of freedom enables new methods for sample manipulation and sample analysis [54]. From a chemical perspective, electric fields can be used for selective analyte transport or to drive electrochemical reactions. Simultaneous integration with microscopy has the potential to spatially localize the electro-response of the system, noninvasively and label-free in the case of MR microscopy.

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