Reversible and DNA Computing

Reversible and DNA Computing
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Описание книги

Master the subjects of reversible computing and DNA computing with this expert volume   Reversible and DNA Computing  offers readers new ideas and technologies in the rapidly developing field of reversible computing. World-renowned researcher and author Hafiz Md. Hasan Babu shows readers the fundamental concepts and ideas necessary to understand reversible computing, including reversible circuits, reversible fault tolerant circuits, and reversible DNA circuits.  Reversible and DNA Computing  contains a practical approach to understanding energy-efficient DNA computing. In addition to explaining the foundations of reversible circuits, the book covers topics including:  Advanced logic design An introduction to the fundamentals of reversible computing Advanced reversible logic synthesis Reversible fault tolerance Fundamentals of DNA computing Reversible DNA logic synthesis DNA logic design This book is perfect for undergraduate and graduate students in the physical sciences and engineering, as well as those working in the field of quantum computing. It belongs on the bookshelves of anyone with even a passing interest in nanotechnology, energy-efficient computing, and DNA computing.

Оглавление

Hafiz M. H. Babu. Reversible and DNA Computing

Table of Contents

List of Tables

List of Illustrations

Guide

Pages

Reversible and DNA Computing

List of Figures

List of Tables

About the Author

Preface

Acknowledgments

Acronyms

Introduction

Part I Reversible Circuits. An Overview About Reversible Circuits

1 Reversible Logic Synthesis

1.1 Reversible Logic

1.2 Reversible Function

1.3 Reversible Logic Gate

Property 1.3.1

Example 1.1

1.4 Garbage Outputs

Example 1.2

1.5 Constant Inputs

Example 1.3

1.6 Quantum Cost

Example 1.4

Example 1.5

1.7 Delay

Example 1.6

1.8 Power

Example 1.7

1.9 Area

Example 1.8

1.10 Hardware Complexity

Example 1.9

1.11 Quantum Gate Calculation Complexity

Example 1.10

1.12 Fan‐Out

Example 1.11

1.13 Self‐Reversible

Example 1.12

1.14 Reversible Computation

1.15 Area

1.16 Design Constraints for Reversible Logic Circuits

1.17 Quantum Analysis of Different Reversible Logic Gates

Property 1.17.1

1.17.1 Reversible NOT Gate (Feynman Gate) Example 1.13

1.17.2 Toffoli Gate

1.17.3 Fredkin Gate

1.17.4 Peres Gate

1.18 Summary

2 Reversible Adder and Subtractor Circuits

2.1 Reversible Multi‐Operand n‐Digit Decimal Adder

2.1.1 Full Adder

The FAG Gate

Reversible FAG Gate as Full Adder

Property 2.1.1.1

Proof

Example 2.1.1.1

2.1.2 Carry Skip Adder

2.1.2.1 Design of Carry Skip Adder

Property 2.1.2.1.1

Proof

Property 2.1.2.1.2

Proof

Property 2.1.2.1.3

Property 2.1.2.1.4

Proof

Property 2.1.2.1.5

Proof

2.1.3 Carry Look‐Ahead Adder

Property 2.1.3.1

Proof

2.2 Reversible BCD Adders

Property 2.2.1

Example 2.2.1

Property 2.2.2

Example 2.2.2

Property 2.2.3

2.2.1 Design Procedure of the Reversible BCD Adder

Example 2.2.1.1

Example 2.2.1.2

Example 2.2.1.3

2.2.1.1 Properties of the Reversible BCD Adder

Property 2.2.1.1.1

Proof

Property 2.2.1.1.2

Proof

Property 2.2.1.1.3

Proof

Property 2.2.1.1.4

Proof

Property 2.2.1.1.5

Proof

2.2.2 Design Procedure of the Reversible Carry Skip BCD Adder

Example 2.2.2.1

2.2.2.1 Properties of the Reversible Carry Skip BCD Adder

Property 2.2.2.1.1

Proof

Property 2.2.2.1.2

Proof

Property 2.2.2.1.3

Proof

Property 2.2.2.1.4

Proof

2.3 Reversible BCD Subtractor

2.3.1 Carry Look‐Ahead BCD Subtractor

2.3.2 Carry Skip BCD Subtractor

2.3.3 Design of Conventional Reversible BCD Subtractor

2.3.3.1 Reversible Nine's Complement

2.3.3.2 Reversible BCD Subtractor

2.3.3.3 Reversible Design of Carry Look‐Ahead BCD Subtractor

2.3.3.4 Reversible Design of Carry Skip BCD Subtractor

2.4 Summary

3 Reversible Multiplier Circuit

3.1 Multiplication Using Booth's Recoding

3.2 Reversible Gates as Half Adders and Full Adders

3.3 Some Signed Reversible Multipliers

3.4 Design of Reversible Multiplier Circuit

3.4.1 Some Quantum Gates

3.4.2 Recoding Cell

3.4.3 Partial Product Generation Circuit

3.4.4 Multi‐Operand Addition Circuit

3.4.5 Calculation of Area and Power of Multiplier Circuit

Property 3.4.5.1

Proof

Example 3.4.5.1

Property 3.4.5.2

Proof

Example 3.4.5.2

Property 3.4.5.3

Proof

Example 3.4.5.3

Property 3.4.5.4

Proof

Example 3.4.5.4

Property 3.4.5.5

Proof

Property 3.4.5.6

Proof

Property 3.4.5.7

Proof

Property 3.4.5.8

Proof

Property 3.4.5.9

Proof

Property 3.4.5.10

Proof

Property 3.4.5.11

Proof

Property 3.4.5.12

Proof

Property 3.4.5.13

Proof

3.5 Summary

4 Reversible Division Circuit

4.1 The Division Approaches

4.1.1 Restoring Division

4.1.2 Nonrestoring Division

4.2 Components of Division Circuit

4.2.1 Reversible MUX

4.2.2 Reversible Register

4.2.3 Reversible PIPO Left‐Shift Register

4.2.4 Reversible Parallel Adder

4.3 The Design of Reversible Division Circuit

Property 4.3.0.1

Proof

4.4 Summary

5 Reversible Binary Comparator

5.1 Design of Reversible ‐Bit Comparator

5.1.1 BJS Gate

5.1.2 Reversible 1‐Bit Comparator Circuit

5.1.3 Reversible MSB Comparator Circuit

5.1.4 Reversible Single‐Bit Greater or Equal Comparator Cell

5.1.5 Reversible Single‐Bit Less Than Comparator Cell

5.1.6 Reversible 2‐Bit Comparator Circuit

5.1.7 Reversible ‐Bit Comparator Circuit

Property 5.1.7.1

Proof

Property 5.1.7.2

Proof

Property 5.1.7.3

Proof

Property 5.1.7.4

Proof

Property 5.1.7.5

Proof

Property 5.1.7.6

Proof

Example 5.1.7.1

5.2 Summary

6 Reversible Sequential Circuits

6.1 An Example of Design Methodology

6.2 The Design of Reversible Latches

6.2.1 The SR Latch

6.2.2 The D Latch

6.2.2.1 The D Latch with Outputs and

6.2.2.2 The Negative Enable Reversible D Latch

6.2.3 T Latch

6.2.4 The JK Latch

6.3 The Design of Reversible Master–Slave Flip‐Flops

6.4 The Design of Reversible Latch and the Master–Slave Flip‐Flop with Asynchronous SET and RESET Capabilities

6.5 Summary

7 Reversible Counter, Decoder, and Encoder Circuits

7.1 Synthesis of Reversible Counter

7.1.1 Reversible T Flip‐Flop

7.1.2 Reversible Clocked T Flip‐Flop

7.1.3 Reversible Master–Slave T Flip‐Flop

7.1.4 Reversible Asynchronous Counter

Property 7.1.4.1

Proof

Property 7.1.4.2

Proof

7.1.5 Reversible Synchronous Counter

Property 7.1.5.1

Proof

Property 7.1.5.2

Proof

7.2 Reversible Decoder

7.2.1 Reversible Encoder

7.3 Summary

8 Reversible Barrel Shifter and Shift Register

8.1 Design Procedure of Reversible Bidirectional Barrel Shifter

8.1.1 Reversible 3 3 Modified BJN Gate

8.1.2 Reversible 2's Complement Generator

Property 8.1.2.1

8.1.3 Reversible Swap Condition Generator

Property 8.1.3.1

8.1.4 Reversible Right Rotator

8.1.4.1 (4, 3) Reversible Right Rotator

8.1.4.2 Generalized Reversible Right Rotator

Property 8.1.4.2.1

8.1.5 Reversible Bidirectional Barrel Shifter

Property 8.1.5.1

8.2 Design Procedure of Reversible Shift Register

8.2.1 Reversible Flip‐Flop

8.2.1.1 Reversible SISO Shift Register

8.2.1.2 Reversible SIPO Shift Register

8.2.1.3 Reversible PISO Shift Register

8.2.1.4 Reversible PIPO Shift Register

Property 8.2.1.4.1

Proof

Property 8.2.1.4.2

Proof

Property 8.2.1.4.3

Proof

8.2.1.5 Reversible Universal Shift Register

Property 8.2.1.5.1

Proof

Property 8.2.1.5.2

Proof

Property 8.2.1.5.3

Proof

8.3 Summary

9 Reversible Multiplexer and Demultiplexer with Other Logical Operations

9.1 Reversible Logic Gates

9.1.1 RG1 Gate

9.1.2 RG2 Gate

9.2 Designs of Reversible Multiplexer and Demultiplexer with Other Logical Operations

9.2.1 The R‐I Gate

9.2.2 The R‐II Gate

9.3 Summary

10 Reversible Programmable Logic Devices

10.1 Reversible FPGA

10.1.1 Reversible NH Gate

10.1.2 4 4 Reversible BSP Gate

10.1.3 4‐to‐1 Reversible Multiplexer

Property 10.1.3.1

Proof

10.1.4 Reversible D Latch

Property 10.1.4.1

Proof

10.1.5 Reversible Write‐Enabled Master–Slave Flip‐Flop

10.1.6 Reversible RAM

10.1.7 Design of Reversible FPGA

Property 10.1.7.1

Proof

Property 10.1.7.2

Proof

Property 10.1.7.3

Proof

10.2 Reversible PLA

10.2.1 The Design Procedure

Property 10.2.1.1

Example 10.2.1.1

Property 10.2.1.2

Property 10.2.1.3

Proof

Property 10.2.1.4

Proof

Property 10.2.1.5

Proof

Property 10.2.1.6

Proof

Property 10.2.1.7

Proof

10.2.1.1 Delay Calculation of a Reversible PLA

10.2.1.2 Delay Calculation of AND Plane

10.2.1.3 Delay Calculation of Ex‐OR Plane

10.2.1.4 Delay of Overall Design

10.3 Summary

11 Reversible RAM and Programmable ROM

11.1 Reversible RAM

11.1.1 Reversible FS Gate

Property 11.1.1.1

Proof

11.1.2 Reversible Decoder

Property 11.1.2.1

Proof

Property 11.1.2.2

Proof

11.1.3 Reversible D Flip‐Flop

11.1.4 Reversible Write‐Enabled Master–Slave D Flip‐Flop

11.1.5 Reversible Random Access Memory

Property 11.1.5.1

Proof

Property 11.1.5.2

Proof

11.2 Reversible PROM

11.2.1 Reversible Decoder

11.2.2 Design of Reversible PROM

Property 11.2.2.1

Example 11.2.2.1

Property 11.2.2.2

Example 11.2.2.2

Property 11.2.2.3

Example 11.2.2.3

11.3 Summary

12 Reversible Arithmetic Logic Unit

12.1 Design of ALU

12.1.1 Conventional ALU

12.1.2 The ALU Based on Reversible Logic

12.1.2.1 The Reversible Function Generator

12.1.2.2 The Reversible Control Unit

12.2 Design of Reversible ALU

12.3 Summary

13 Reversible Control Unit

13.1 An Example of Control Unit

13.2 Different Components of a Control Unit

13.2.1 Reversible HL Gate

13.2.2 Reversible BJ Gate

13.2.3 Reversible 2‐to‐4 Decoder

13.2.4 Reversible 3‐to‐8 Decoder

13.2.5 Reversible ‐to‐ Decoder

Property 13.2.5.1

Proof

Property 13.2.5.2

Proof

13.2.6 Reversible JK Flip‐Flop

13.2.7 Reversible Sequence Counter

13.2.8 Reversible Instruction Register

13.2.9 Control of Registers and Memory

13.2.10 Construction Procedure and Complexities of the Control Unit

Property 13.2.10.1

Proof

Property 13.2.10.2

Proof

13.3 Summary

Part II Reversible Fault Tolerance. An Overview About Fault‐Tolerance and Testable Circuits

14 Reversible Fault‐Tolerant Adder Circuits

14.1 Properties of Fault Tolerance

Property 14.1.1

14.1.1 Parity‐Preserving Reversible Gates

14.2 Reversible Parity‐Preserving Adders

14.2.1 Fault‐Tolerant Full Adder

Property 14.2.1.1

Proof

14.2.2 Fault‐Tolerant Carry Skip Adder

Property 14.2.2.1

Property 14.2.2.2

Property 14.2.2.3

Property 14.2.2.4

Proof

Property 14.2.2.5

14.2.3 Fault‐Tolerant Carry Look‐Ahead Adder

Property 14.2.3.1

Property 14.2.3.2

Property 14.2.3.3

Proof

Property 14.2.3.4

Property 14.2.3.5

14.2.4 Fault‐Tolerant Ripple Carry Adder

14.3 Summary

15 Reversible Fault‐Tolerant Multiplier Circuit

15.1 Reversible Fault‐Tolerant Multipliers

15.1.1 Reversible Fault‐Tolerant Multiplier

15.1.2 LMH Gate

15.1.3 Partial Product Generation

15.1.4 Multi‐Operand Addition

Property 15.1.4.1

Proof

Property 15.1.4.2

Proof

Property 15.1.4.3

Proof

15.2 Summary

16 Reversible Fault‐Tolerant Division Circuit

16.1 Preliminaries of Division Circuits

16.1.1 Division Algorithms

16.2 The Division Method

16.2.1 Floating‐Point Data and Rounding

16.2.2 Correctly Rounded Division

Property 16.2.2.1

Proof

16.2.3 Correct Rounding from One‐Sided Approximations

16.2.4 The Algorithm for Division Operation

Property 16.2.4.1

Proof

16.3 Components of a Division Circuit

16.3.1 Reversible Fault‐Tolerant MUX

16.3.2 Reversible Fault‐Tolerant D Latch

16.4 The Design of the Division Circuit

16.4.1 Reversible Fault‐Tolerant PIPO Left‐Shift Register

16.4.2 Reversible Fault‐Tolerant Register

16.4.3 Reversible Fault‐Tolerant Rounding Register

16.4.4 Reversible Fault‐Tolerant Normalization Register

16.4.5 Reversible Fault‐Tolerant Parallel Adder

Property 16.4.5.1

Proof

16.4.6 The Reversible Fault‐Tolerant Division Circuit

16.5 Summary

17 Reversible Fault‐Tolerant Decoder Circuit

17.1 Transistor Realization of Some Popular Reversible Gates

17.1.1 Feynman Double Gate

17.1.2 Fredkin Gate

17.2 Reversible Fault‐Tolerant Decoder

Property 17.2.1

Proof

Example 17.2.1

Property 17.2.2

Proof

Example 17.2.2

Property 17.2.3

Proof

Example 17.2.3

Property 17.2.4

Proof

Example 17.2.4

17.3 Summary

18 Reversible Fault‐Tolerant Barrel Shifter

18.1 Properties of Barrel Shifters

Property 18.1.1

Proof

18.2 Reversible Fault‐Tolerant Unidirectional Logarithmic Rotators

Property 18.2.1

Property 18.2.2

Property 18.2.3

Property 18.2.4

Proof

Property 18.2.5

Proof

18.3 Fault‐Tolerant Unidirectional Logarithmic Logical Shifters

Property 18.3.1

Proof

Property 18.3.2

Proof

18.4 Summary

19 Reversible Fault‐Tolerant Programmable Logic Devices

19.1 Reversible Fault‐Tolerant Programmable Logic Array

Property 19.1.1

Property 19.1.2

Property 19.1.3

Example 19.1.1

19.1.1 The Design of RFTPLA

Property 19.1.1.1

Proof

Property 19.1.1.2

Example 19.1.1

Property 19.1.1.3

Example 19.1.2

Proof

Example 19.1.3

Property 19.1.1.4

Proof

Example 19.1.4

19.2 Reversible Fault‐Tolerant Programmable Array Logic

19.2.1 The Design of AND Plane of RFTPAL

19.2.2 The Design of Ex‐OR Plane of RFTPAL

19.3 Reversible Fault‐Tolerant LUT‐Based FPGA

19.3.1 Reversible Fault‐Tolerant Gates

19.3.2 Proof of Fault‐Tolerance Properties of the MSH and MSB Gates

19.3.3 Physical Implementation of the Gates

19.3.4 Reversible Fault‐Tolerant D Latch, Master–Slave Flip‐Flop and Multiplexer

Property 19.3.4.1

Property 19.3.4.2

Property 19.3.4.3

19.3.5 Reversible Fault‐Tolerant ‐Input Look‐Up Table

19.3.6 Reversible Fault‐Tolerant CLB of FPGA

19.4 Summary

20 Reversible Fault‐Tolerant Arithmetic Logic Unit

20.1 Design of ‐bit ALU

20.1.1 A Parity‐Preserving Reversible Gate

Property 20.1.1.1

Proof

Property 20.1.1.2

Proof

Property 20.1.1.3

Proof

Property 20.1.1.4

Proof

20.1.2 1‐Bit ALU

20.1.2.1 Group‐1 PP Cell

20.1.2.2 Group‐2 PP Cell

20.1.2.3 Group‐3 PP Cell

20.1.2.4 ‐bit ALU

Property 20.1.2.1

Proof

Property 20.1.2.2

Proof

Property 20.1.2.3

Proof

20.2 Summary

21 Online Testable Reversible Circuit Using NAND Blocks

21.1 Testable Reversible Gates

21.2 Two‐Pair Rail Checker

21.3 Synthesis of Reversible Logic Circuits

21.4 Summary

22 Reversible Online Testable Circuits

22.1 Online Testability

22.1.1 Online Testable Approach Using R1, R2, and R Gates

22.1.2 Online Testable Approach Using Testable Reversible Cells (TRCs)

22.1.3 Online Testable Circuit Using Online Testable Gate

22.1.4 Online Testing of ESOP‐Based Circuits

22.1.5 Online Testing of General Toffoli Circuit

22.2 The Design Approach

22.2.1 The UFT Gate

Property 22.2.1.1

Proof

Property 22.2.2

Proof

Property 22.2.3

Proof

22.2.2 Analysis of the Online Testable Approach

Example 22.2.2.1

Example 22.2.2.2

22.3 Summary

23 Applications of Reversible Computing

Why We Need to Use Reversible Circuits

Applications of Reversible Computing

23.1 Adiabatic Systems

23.2 Quantum Computing

23.3 Energy‐Efficient Computing

23.4 Switchable Program and Feedback Circuits

23.5 Low‐Power CMOS

23.6 Digital Signal Processing (DSP) and Nano‐Computing

Part II DNA Computing. An Overview About DNA Computing

24 Background Studies About Deoxyribonucleic Acid

24.1 Structure and Function of DNA

24.2 DNA Computing

24.2.1 Watson‐Crick Complementary

24.2.2 Adleman's Breakthrough

24.3 Relationship of Binary Logic with DNA

24.4 Welfare of DNA Computing

24.5 Summary

25 A DNA‐Based Approach to Microprocessor Design

25.1 Basics of Microprocessor Design

25.2 Characteristics and History of Microprocessors

25.3 Methodology of Microprocessor Design

25.4 Construction of Characteristic Tree

25.5 Traversal of the Tree

25.6 Encoding of the Traversed Path to the DNA Sequence

25.6.1 Gene Pool

25.6.2 Potency Factor

25.7 Combination of DNA Sequences

25.8 Decoding the Output String

25.9 Processor Evaluation

25.10 Post‐Processing

25.11 Gene Pool Update

25.12 Summary

26 DNA‐Based Reversible Circuits

26.1 DNA‐Based Reversible Gates

26.2 DNA‐Based Reversible NOT Gate

Example 26.2.1

26.3 DNA‐Based Reversible Ex‐OR Gate

Example 26.3.1

26.4 DNA‐Based Reversible AND Gate

Example 26.4.1

26.5 DNA‐Based Reversible OR Gate

Example 26.5.1

Property 26.5.1

Proof

Example 26.5.2

26.6 DNA‐Based Reversible Toffoli Gate

Example 26.6.1

26.6.1 Fan‐out Technique of a DNA‐Based Toffoli Gate

Property 26.6.1.1

Proof

26.6.2 DNA‐Based Reversible NOT Operation

26.6.3 DNA‐Based Reversible AND Operation

26.6.4 DNA‐Based Reversible OR Operation

26.6.5 DNA‐Based Reversible Ex‐OR Operation

26.6.6 Properties of DNA‐Based Reversible Toffoli Gate

26.6.7 DNA‐Based Reversible Fredkin Gates

26.7 Realization of Reversible DNA‐Based Composite Logic

26.8 Summary

27 Addition, Subtraction, and Comparator Using DNA

27.1 DNA‐Based Adder

Property 27.1.1

Proof

Example 27.1.1

Property 27.1.2

Proof

Example 27.1.2

Example 27.1.3

27.2 DNA‐Based Addition/Subtraction Operations

27.2.1 Addition and Subtraction Operations

27.2.2 Procedures of DNA‐Based Reversible Addition/ Subtraction Operations

Property 27.2.2.1

Proof

27.3 DNA‐Based Comparator

27.3.1 Sequence Design

27.3.2 Estimation of Rate Constant

27.4 Summary

28 Reversible Shift and Multiplication Using DNA

28.1 DNA‐Based Reversible Shifter Circuit

28.1.1 Procedures of DNA‐Based Shifter Circuit

28.2 DNA‐Based Reversible Multiplication Operation

Example 28.2.1

28.3 Summary

29 Reversible Multiplexer and ALU Using DNA

29.1 DNA‐Based Reversible Multiplexer

29.1.1 The Working Procedures of DNA‐Based Multiplexer Circuit

29.2 DNA‐Based Reversible Arithmetic Logic Unit

29.2.1 Procedures of DNA‐Based ALU

29.2.2 Properties of the DNA‐Based ALU

Property 29.2.2.1

Proof

Property 29.2.2.2

Proof

Property 29.2.2.3

Proof

Property 29.2.2.4

Proof

Property 29.2.2.6

Proof

Property 29.2.2.6

Proof

29.3 Summary

30 Reversible Flip‐Flop Using DNA

30.1 The Design of a DNA Fredkin Gate

30.2 Simulating the Fredkin Gate by Sticking System

30.2.1 Simulating the Fredkin Gate by Enzyme System

30.3 Simulation of the Reversible D Latch Using DNA Fredkin Gate

30.3.1 Simulation of the Reversible Sequential Circuit Using DNA Fredkin Gate

30.4 DNA‐Based Biochemistry Technology

30.5 Summary

31 Applications of DNA Computing

How DNA Computing Works

Applications of DNA Computing

31.1 Solving the Optimization and Scheduling Problems Like the Traveling Salesman Problem

31.2 Parallel Computing

31.3 Genetic Algorithm

31.4 Neural System

31.5 Fuzzy Logic Computation and Others

31.6 Lift Management System

31.7 DNA Chips

31.8 Swarm Intelligence

31.9 DNA and Cryptography Systems

31.10 Monstrous Memory Capacity

31.11 Low‐Power Dissipation

31.12 Summary

Conclusion

Copyright Permission of Third‐Party Materials

Bibliography

Index

WILEY END USER LICENSE AGREEMENT

Отрывок из книги

Hafiz Md H. Babu

Department of Computer Science and Engineering University of Dhaka, Bangladesh

.....

Figure 1.6 shows the block diagram of a reversible Fredkin (FRG) gate. The figure describes that there is only one NOT operation, two EX‐OR operations, and four AND operations. So, the hardware complexity of the reversible FRG gate is .

The quantum gate calculation complexity of the quantum representation of a reversible circuit specifies the total number of quantum gates (NOT gates, CNOT gates, and controlled‐V (controlled‐) gates) used in the quantum representation of a reversible circuit. Consequently, the quantum gate calculation complexity can be determined using the following equation:

.....

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