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The anatomical structure of the squamules is in general somewhat similar to that of the crustaceous thallus: an upper cortex, a gonidial zone, and below that a medullary layer of loose hyphae with sometimes a lower cortex.

1. The upper cortex, as in crustaceous lichens, is generally of the “decomposed”[341] or amorphous type: interlaced hyphae with thick gelatinous walls. A more highly developed form is apparent in Parmeliella and Pannaria where the upper cortex is formed of plectenchyma, while in the squamules of Heppia the whole structure is built up of plectenchyma, with the exception of a narrow band of loose hyphae in the central pith.

2. The gonidia are Myxophyceae or Chlorophyceae; the squamules in some instances may be homoiomerous as in Lepidocollema, but generally they belong to the heteromerous series, with the gonidia in a circumscribed zone, and either continuous or in groups. Friedrich[342] held that, as in crustaceous lichens the development of the gonidial as compared with the other tissues depended on the substratum. The squamules of Pannaria microphylla on sandstone were 100 µ thick, and the gonidial layer occupied 80 or 90 µ of the whole[343]. With that may be compared Placodium Garovagli on lime-containing rock: the gonidial layer measured only 50 µ across, the pith hyphae 280 µ and the rhizoidal hyphae that penetrated the rock 500 µ.

3. The medullary layer, as a rule, is of closely compacted hyphae which give solidity to the squamules; in those of Heppia it is almost entirely formed of plectenchyma.

4. The lower cortex is frequently little developed or absent, especially when the squamules are closely applied to the support as in some species of Dermatocarpon. In some of the squamulose Lecanorae (L. crassa and L. saxicola) the lowest hyphae are somewhat more closely interwoven; they become brown in colour, and the lichen is attached to the substratum by rhizoid-like branches. In Lecanora lentigera there is a layer of parallel hyphae along the under surface. Further development is reached when a plectenchyma of thick-walled cells is formed both above and below, as in Psoroma hypnorum, though on the under surface the continuity is often broken. The squamules of Cladoniae are described under the radiate-stratose series.