| UCSC Genome Browser |
| Main page | genome.ucsc.edu |
| Genome Browser User's Guide | genome.ucsc.edu/goldenPath/help/hgTracksHelp.html |
| Table Browser User's Guide | genome.ucsc.edu/goldenPath/help/hgTablesHelp.html |
| Displaying custom annotation data | genome.ucsc.edu/goldenPath/help/customTrack.html |
| Data file formats for custom annotation | genome.ucsc.edu/FAQ/FAQformat.html |
| Sessions User's Guide | genome.ucsc.edu/goldenPath/help/hgSessionHelp.html |
| Using UCSC Genome Browser Track Hubs | genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html |
| Assembly Hubs wiki | genomewiki.ucsc.edu/index.php/Assembly_Hubs |
| Contact information | genome.ucsc.edu/contacts.html |
| Ensembl Genome Browser |
| Main page | www.ensembl.org |
| Ensembl Stable IDs | www.ensembl.org/info/genome/stable_ids |
| Ensembl Archives | www.ensembl.org/info/website/archives |
| BioMart | www.ensembl.org/biomart/martview |
| pre!Ensembl | pre.ensembl.org |
| Help & Documentation | www.ensembl.org/info |
| BioMart documentation | www.ensembl.org/info/data/biomart |
| Displaying custom annotation data | www.ensembl.org/info/website/upload |
| Data file formats for custom annotation | www.ensembl.org/info/website/upload/index.html#formats |
| Contact information | www.ensembl.org/info/about/contact |
| JBrowse |
| JBrowse Genome Browser | jbrowse.org |
| COSMIC Genome Browser | cancer.sanger.ac.uk/cosmic/browse/genome |
| Mnemiopsis Genome Project Portal (MGAP) | research.nhgri.nih.gov/mnemiopsis |
| Phytozome | phytozome.jgi.doe.gov |
| Rat Genome Database | rgd.mcw.edu |
| Other genome resources |
| GENCODE | www.gencodegenes.org |
| Genome Reference Consortium | www.ncbi.nlm.nih.gov/grc |
| GWAS Catalog | www.ebi.ac.uk/gwas |
| National Center for Biotechnology Information (NCBI) Genome Data Viewer | www.ncbi.nlm.nih.gov/genome/gdv |
| National Institutes of Health (NIH) Genomic Data Sharing Policyies | osp.od.nih.gov/scientific-sharing/policies |
| NIH Genotype-Tissue Expression (GTEx) Portal | www.gtexportal.org |
| Track Hub Registry | www.trackhubregistry.org |
