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Papers of Special Interest

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Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, Cho A, Fox D, III, Wetmore DR, McGrath ME, Ray AS, Sofia MJ, Swaminathan S, Edwards TE. 2015. Viral replication. Structural basis for RNA replication by the hepatitis C virus polymerase. Science 347:771–775.

Structure of the hepatitis C virus RNA polymerase reveals that highly conserved active-site residues position the primer for attack on the incoming nucleotide.

Arranz R, Coloma R, Chichón FJ, Conesa JJ, Carrascosa JL, Valpuesta JM, Ortín J, Martín-Benito J. 2012. The structure of native influenza virion ribonucleoproteins. Science 338:1634–1637.

Structure of RNPs from virus particles reveals a double-helical conformation in which two strands of opposite polarity are associated along the helix.

Gallagher JR, Torian U, McCraw DM, Harris AK. 2017. Structural studies of influenza virus RNPs by electron microscopy indicate molecular contortions within NP supra-structures. J Struct Biol 197:294–307.

The use of electron tomography and image analysis reveals that isolate RNP filaments are not rigid helical structures.

Gong P, Peersen OB. 2010. Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase. Proc Natl Acad Sci U S A 107:22505–22510.

Structures of poliovirus RdRP reveal a pre-positioned templating base for nucleotide recognition, and a structural rearrangement in the palm domain leads to closure of catalytically active sites.

Kempf BJ, Watkins CL, Peersen OB, Barton DJ. 2019. Picornavirus RNA recombination counteracts error catastrophe. J Virol 93:e00652–e19.

Picornavirus RNA recombination counteracts the negative consequences of error-prone RNA replication.

Kirchdoerfer RN, Saphire EO, Ward AB. 2019. Cryo-EM structure of the Ebola virus nucleoprotein-RNA complex. Acta Crystallogr F Struct Biol Commun 75:340–347.

High-resolution structure reveals details of protein-protein and protein-RNA interactions.

Liang B, Li Z, Jenni S, Rahmeh AA, Morin BM, Grant T, Grigorieff N, Harrison SC, Whelan SPJ. 2015. Structure of the L protein of vesicular stomatitis virus from electron cryomicroscopy. Cell 162:314–327.

Structure of the L protein reveals a core RNA polymerase, an mRNA capping domain, and a methyltransferase domain.

Matsumoto Y, Ohta K, Kolakofsky D, Nishio M. 2018. The control of paramyxovirus genome hexamer length and mRNA editing. RNA 24:461–467.

How the requirement for genome hexamer length, bipartite replication promoters, and P gene mRNA editing are linked among paramyxoviruses.

Moeller A, Kirchdoerfer RN, Potter CS, Carragher B, Wilson IA. 2012. Organization of the influenza virus replication machinery. Science 338: 1631–1634.

Cryo-electron microscopy structure of influenza virus RNP reveals architecture and organization of the native complex.

Pflug A, Guilligay D, Reich S, Cusack S. 2014. Structure of influenza A polymerase bound to the viral RNA promoter. Nature 516:355–360.

Crystal structure of trimeric influenza viral RdRP bound to its promoter, revealing mechanisms of activation and cap snatching.

Reich S, Guilligay D, Pflug A, Malet H, Berger I, Crépin T, Hart D, Lunardi T, Nanao M, Ruigrok RW, Cusack S. 2014. Structural insight into cap-snatching and RNA synthesis by influenza polymerase. Nature 516: 361–366.

Structures of influenza virus RNA polymerase bound to viral RNA provide mechanistic insight into the different processes of mRNA synthesis and genome RNA replication.

Subissi L, Posthuma CC, Collet A, Zevenhoven-Dobbe JC, Gorbalenya AE, Decroly E, Snijder EJ, Canard B, Imbert I. 2014. One severe acute respiratory syndrome coronavirus protein complex integrates processive RNA polymerase and exonuclease activities. Proc Natl Acad Sci U S A 111:E3900– E3909.

Identification of a tripartite polymerase complex associated with the viral proofreading enzyme.

Principles of Virology

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