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1 Able, K.W. 2005. A re‐examination of fish estuarine dependence: evidence for connectivity between estuarine and ocean habitats. Estuarine, Coastal and Shelf Science 64, 5–17.

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3 Able, K.W. & Fahay, M.P. 2010. Ecology of Estuarine Fishes: Temperate Waters of the Western North Atlantic. The Johns Hopkins University Press, Baltimore, Maryland.

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5 Able, K.W., Simenstad, C.A., Strydom, N.A., et al. 2022. Chapter 4. Habitat use and connectivity. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 188–254. Wiley Blackwell, Oxford, UK.

6 Adams, S.M. 2005. Using multiple response bioindicators to assess the health of estuarine ecosystems: an operational framework. In: Estuarine Indicators (ed., Bortone, S.A. ), pp. 5–18. CRC Press, Boca Raton.

7 Andrews, M.J. & Rickard, D.G. 1980. Rehabilitation of the inner Thames Estuary. Marine Pollution Bulletin 11, 327–332.

8 Araújo, F.G., Azevedo, M.C.C., Silva, M.A., et al. 2002. Environmental influences on the demersal fish assemblages in the Sepetiba Bay, Brazil. Estuaries 25, 441–450.

9 Attrill, M.J. & Rundle, S.D. 2002. Ecotone or ecocline: ecological boundaries in estuaries. Estuarine, Coastal and Shelf Science 55, 929–936.

10 Barletta, M., Amaral, C.S., Correa, M.F.M., et al. 2008. Factors affecting seasonal variations in demersal fish assemblages at an ecocline in a tropical‐subtropical estuary. Journal of Fish Biology 73, 1314–1336.

11 Basset, A., Barbone, E., Elliott, M., et al. 2013. A unifying approach to understanding transitional waters: fundamental properties emerging from ecotone ecosystems. Estuarine, Coastal and Shelf Science 132, 5–16.

12 Blaber, S.J.M. 1991. Deep sea, estuarine and freshwater fishes: life history strategies and ecological boundaries. Southern African Journal of Aquatic Sciences 17, 2–11.

13 Blaber, S.J.M. 2000. Tropical Estuarine Fishes – Ecology, Exploitation and Conservation. Blackwell Science, UK.

14 Blaber, S.J.M., Able, K.W. & Cowley, P.D. 2022. Chapter 9. Estuarine fisheries. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 553–616. Wiley Blackwell, Oxford, UK.

15 Blaber, S.J.M., Cyrus, D.P., Albaret, J.‐J., et al. 2000. Effects of fishing on the structure and functioning of estuarine and nearshore ecosystems. ICES Journal of Marine Science 57, 590–602.

16 Cabral, H.N., Borja, A., Fonseca, V.F., et al. 2022. Chapter 6. Fishes and environmental health. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 332–379. Wiley Blackwell, Oxford, UK.

17 Carriker, M.R. 1967. Ecology of estuarine benthic invertebrates: a perspective. In: Estuaries (ed. Lauff, G.H. ), pp. 442–487. American Association for the Advancement of Science, Washington, DC.

18  Chaves, M.C.N.R., Franco, A.C.S.F., Seixas, L.B., et al. 2018. Testing the ecocline concept for fish assemblages along the marine‐estuarine gradient in a highly‐eutrophic estuary (Guanabara Bay, Brazil). Estuarine, Coastal and Shelf Science 211, 118–126.

19 Cooper, S.R & Brush, G.S. 1993. A 2,500‐year history of anoxia and eutrophication in Chesapeake Bay. Estuaries 16, 617–626.

20 Cowan, J.H. Jr., Yáñez‐Arancibia, A., Sanchez‐Gil, P., et al. 2013. Chapter 13. Estuarine nekton. In: Estuarine Ecology, 2nd Edition (ed., Day, J.W., Crump, B.C., Kemp, W.M., et al.), pp. 327–355. Wiley‐Blackwell, USA.

21 Cowley, P.D., Tweedley, J.R. & Whitfield, A.K. 2022. Chapter 10. Fish conservation. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 617–683. Wiley Blackwell, Oxford, UK.

22 Day, J.W., Yáñez‐Arancibia, A., Kemp, W.M. et al. 2013. Chapter 1. Introduction to estuarine ecology. In: Estuarine Ecology, 2nd Edition (ed., Day, J.W., Crump, B.C., Kemp, W.M., et al.), pp. 1–18. Wiley‐Blackwell, USA.

23 de Groot, S.J. 2002. A review of the past and present status of anadromous fish species in the Netherlands: is restocking the Rhine feasible? In: Ecological Restoration of Aquatic and Semi‐Aquatic Ecosystems in the Netherlands (NW Europe) (ed., Nienhuis, P.H. & Gulati, R.D. ). Developments in Hydrobiology, Volume 166. Springer, Dordrecht.

24 Elliott, M. 2011. Marine science and management means tackling exogenic unmanaged pressures and endogenic managed pressures – a numbered guide. Marine Pollution Bulletin 62, 651–655.

25 Elliott, M., Able, K.W., Blaber, S.J.M., et al. 2022b. Fish and fisheries in estuaries: global synthesis and future research directions. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 798–873. Wiley Blackwell, Oxford, UK.

26 Elliott, M., Day, J.W., Ramachandran, R., et al. 2019. Chapter 1. A synthesis: what future for coasts, estuaries, deltas, and other transitional habitats in 2050 and beyond? In: Coasts and Estuaries: The Future (ed., Wolanski, E., Day, J.W., Elliott, M., et al.), pp. 1–28. Elsevier, Amsterdam.

27 Elliott, M., Franco, A., Ramos, S., et al. 2022c. Appendix 2. Study methods II – data processing, analysis and interpretation. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 941–1005. Wiley Blackwell, Oxford, UK.

28 Elliott, M. & Hemingway, K.L. 2008. Fishes in Estuaries. John Wiley & Sons, UK.

29 Elliott, M., Lonsdale, J.A., Houde, E.D., et al. 2022a. Chapter 12. Management of fishes and fisheries in estuaries. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 706–797. Wiley Blackwell, Oxford, UK.

30 Elliott, M., Mander, L., Mazik, K., et al. 2016. Ecoengineering with ecohydrology: successes and failures in estuarine restoration. Estuarine, Coastal and Shelf Science 176, 12–35.

31 Elliott, M. & Quintino, V.M. 2019. The estuarine quality paradox concept. In: Encyclopaedia of Ecology, Volume 1, 2nd Edition (ed., Fathi, B. ), pp. 78–85. Elsevier, Amsterdam.

32 Elliott, M., Whitfield, A.K., Potter, I.C., et al. 2007. The guild approach to categorizing estuarine fish assemblages: a global review. Fish and Fisheries 8, 241–268.

33 Ferreira, M., Moradas‐Ferreira, P. & Reis‐Henriques, M.A. 2005. Oxidative stress biomarkers in two resident species, mullet (Mugil cephalus) and flounder (Platichthys flesus), from a polluted site in River Douro Estuary, Portugal. Aquatic Toxicology 71, 39–48.

34 Franco, A., Elliott, M., Franzoi, P., et al. 2022. Appendix 1. Study methods I – field equipment, sampling and methods. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 874–940. Wiley Blackwell, Oxford, UK.

35 Gillanders, B.M., McMillan, M.N., Reis‐Santos, P., et al. 2022. Chapter 7. Climate change and fishes in estuaries. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 380–457. Wiley Blackwell, Oxford, UK.

36  Griffiths, M.H. 1997. Management of dusky kob Argyrosomus japonicus (Sciaenidae) based on per‐recruit models. South African Journal of Marine Science 18, 213–228.

37 Haedrich, R.L. 1983. Estuarine fishes. In: Ecosystems of the World. Volume 26, Estuaries and Enclosed Seas (ed., Ketchum, B.H. ), pp. 183–207. Elsevier: New York.

38 Hall, C.J., Jordaan, A. & Frisk, M.G. 2012. Centuries of anadromous forage fish loss: consequences for ecosystem connectivity and productivity. Bioscience 62, 723–731.

39 Houde, E.D., Able, K.W., Strydom, N.A., et al. 2022. Chapter 3. Reproduction, ontogeny and recruitment. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 60–187. Wiley Blackwell, Oxford, UK.

40 Jones, P.D. 2006. Water quality and fisheries in the Mersey Estuary, England: a historical perspective. Marine Pollution Bulletin 53, 144–154.

41 Lepage, M., Capderrey, C., Meire, P., et al. 2022. Chapter 8. Estuarine degradation and rehabilitation. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 458–552. Wiley Blackwell, Oxford, UK.

42 Martino, E. & Able, K.W. 2003. Fish assemblages across the marine to low salinity transition zone of a temperate estuary. Estuarine, Coastal and Shelf Science 56, 967–985.

43 McHugh, J.L. 1967. Estuarine nekton. American Association for the Advancement of Science Publication 83, 581–620.

44 Miller, J.M., Reed, J.P. & Pietrafesa, L.J. 1984. Patterns, mechanisms and approaches to the study of migrations of estuarine‐dependent fish larvae and juveniles. In: Mechanisms of Migration in Fishes (ed., McCleave, J.D., Arnold, G.P., Dodson J.J., et al.), pp. 209–225. NATO Conference Series (IV Marine Sciences), Volume 14. Springer, Boston.

45 Moyle, P.B. & Stompe, D.K. 2022. Chapter 11. Non‐native fishes in estuaries. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 684–705. Wiley Blackwell, Oxford, UK.

46 Nie, X., Lan, C., Wei, T. & Yang, Y. 2005. Distribution of polychlorinated biphenyls in the water, sediment and fish from the Pearl River Estuary, China. Marine Pollution Bulletin 50, 537–546.

47 Oliva, M., Vicente, J.J., Gravato, C., et al. 2012. Oxidative stress biomarkers in Senegal sole, Solea senegalensis, to assess the impact of heavy metal pollution in a Huelva estuary (SW Spain): seasonal and spatial variation. Ecotoxicology and Environmental Safety 75, 151–162.

48 Potter, I.C., Chuwen, B.M., Hoeksema, S.D., et al. 2010. The concept of an estuary: a definition that incorporates systems which can become closed to the ocean and hypersaline. Estuarine, Coastal and Shelf Science 87, 497–500.

49 Potter, I.C., Tweedley, J.R., Elliott, M., et al. 2015. The ways in which fish use estuaries: a refinement and expansion of the guild approach. Fish and Fisheries 16, 230–239.

50 Silvert, W. 1992. Assessing environmental impacts of finfish aquaculture in marine waters. Aquaculture 107, 67–79.

51 Vendel, A.L., Bessa, F., Alves, V.E.N., et al. 2017. Widespread microplastic ingestion by fish assemblages in tropical estuaries subjected to anthropogenic pressures. Marine Pollution Bulletin 117, 448–455.

52 Whitfield, A. & Elliott, M. 2011. Ecosystem and biotic classifications of estuaries and coasts. In: Treatise on Estuarine and Coastal Science, Volume 1 (ed., Wolanski, E. & McLusky, D.S. ), pp. 99–124. Academic Press, Waltham.

53 Whitfield, A.K. 1996. Fishes and the environmental status of South African estuaries. Fisheries Management and Ecology 3, 45–58.

54 Whitfield, A.K. 2019. Fishes of Southern African Estuaries: From Species to Systems. Smithiana Monograph No. 4, 495 pp.

55 Whitfield, A.K. 2020. Fish species in estuaries – from partial association to complete dependency. Journal of Fish Biology 97, 1262–1264.

56  Whitfield, A.K., Able, K.W., Blaber, S.J.M., et al. 2022a. Chapter 2. Fish assemblages and functional groups. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 16–59. Wiley Blackwell, Oxford, UK.

57 Whitfield, A.K., Able, K.W., Blaber, S.J.M., et al. 2022b. Chapter 5. Feeding ecology and trophic dynamics. In: Fish and Fisheries in Estuaries: A Global Perspective (ed., Whitfield, A.K., Able, K.W., Blaber, S.J.M. & Elliott, M. ), pp. 255–331. Wiley Blackwell, Oxford, UK.

58 Whitfield, A.K. & Elliott, M. 2002. Fishes as indicators of environmental and ecological changes within estuaries: a review of progress and some suggestions for the future. Journal of Fish Biology 61 (Supplement A), 229–250.

59 Whitfield, A.K., Elliott, M., Basset, A., et al. 2012. Paradigms in estuarine ecology – a review of the Remane diagram with a suggested revised model for estuaries. Estuarine, Coastal and Shelf Science 97, 78–90.

60 Whitfield, A.K., Weerts, S.P. & Weyl, O.L.F. 2017. A review of the influence of biogeography, riverine linkages, and marine connectivity on fish assemblages in evolving lagoons and lakes of coastal southern Africa. Ecology and Evolution 7, 7382–7398.

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