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Approaches to preimplantation genetic testing

Оглавление

When prenatal genetic diagnosis was first considered in perspective, in 1984, the World Health Organization (WHO) emphasized the relevance of developing earlier approaches for genetic analysis with the possibility of diagnosis before implantation.9, 10 The following possibilities for PGT were mentioned: genetic analysis of the first or second polar bodies and embryo biopsy at the cleavage or blastocyst stage.10, 11 However, these approaches became possible only after introduction of the PCR assay12 and success in micromanipulation and embryo biopsy.

First attempts at PGT were undertaken in mammalian embryos over 30 years ago,1318 when it was demonstrated that cells could be removed from mammalian preimplantation embryos and analyzed successfully without destroying the viability of the embryo in in vitro fertilization (IVF). PGT for human genetic disease was first demonstrated by Handyside et al.19 for X‐linked diseases and by Verlinsky et al.20 for autosomal recessive disorders. Tens of thousands of children without detectable birth defects have been born following these procedures,2125 demonstrating that PGT can be performed safely in humans. Initially, PGT was based on polar body sampling and embryo biopsy at the cleavage stage, but the present standard shifted to blastocyst biopsy. The polar body approach is still, however, the only possibility for the ethnic groups where no embryos micromanipulation is allowed. The Preimplantation Genetic Diagnosis International Society (PGDIS) and the European Society of Human Reproduction and Embryology (ESHRE) Consortium have published an extensive set of best practice guidelines for PGT.26, 27 These recommendations cover PGT organization, genetic and treatment‐related counseling, psychologic evaluation, patient selection, all applicable technical issues, and quality control. The developments of preconception and PGT and the existing problems in the application of these early approaches to clinical practice are presented in this chapter, based on our 30 years' experience of over 22,000 PGT cycles, including 15,700 PGT‐A, 491 PGT‐HLA, and 6,778 PGT‐M, involving a spectrum of, approximately, 600 different monogenic conditions (Table 2.1).

Table 2.1 List of conditions for which preimplantation genetic testing (PGT) was performed and PGT‐M outcome: 30 years of original experience.

Conditions Gene Type of inheritance No. patients No. cycles No. embryo transfers No. embryos transferred Pregnancy % No. deliveries
3‐Hydroxyisobutyryl‐CoA hydrolase deficiency (HIBCHD) HIBCH AR 1 1 1 2 0 0
3‐Methylglutaconic aciduria with deafness, encephalopathy, and Leigh‐like syndrome (MEGDEL) SERAC1 AR 1 1 1 1 0 0
Achondroplasia (ACH) FGFR3 AD 8 17 11 14 7 6
Achromatopsia 2 (ACHM2) CNGA3 AR 1 1 1 1 1 1
Achromatopsia 3 (ACHM3) CNGB3 AR 3 4 4 5 2 2
Acromesomelic dysplasia, Maroteaux type (AMDM) NPR2 AR 1 1 2 2 1 1
Acyl‐CoA dehydrogenase, medium‐chain, deficiency ACADM AR 3 8 7 14 4 4
Acyl‐CoA dehydrogenase, very long‐chain; (ACADVL) ACADVL AR 5 6 6 11 2 2
Adrenal hyperplasia, congenital, due to 21‐hydroxylase deficiency CYP21A2 AR 23 34 26 42 17 17
Adrenoleukodystrophy (ALD) ABCD1 XL 17 33 20 29 11 11
Agammaglobulinemia, X‐linked (XLA) BTK XL 4 7 7 13 3 3
Aicardi–Goutieres syndrome 5 (AGS5 + CF) SAMHD1 AR 1 2 2 2 1 1
Alagille syndrome 1 (ALGS1) JAG1 AD 1 1 1 1 1 1
Albinism, ocular, type i (OA1) GPR143 XL 1 12 5 9 4 3
Albinism, oculocutaneous, type ia (OCA1a) TYR AR 4 7 6 9 3 3
Albinism, oculocutaneous, type ii (OCA2) OCA2 AR 3 6 5 9 3 3
Albinism, oculocutaneous, type iii (OCA3) TYRP1 AR 1 1 0 0 0 0
Allan–Herndon–Dudley syndrome (AHDS) SLC16A2 XL 1 2 2 2 1 1
Alopecia universalis congenita (ALUNC) HR AR 1 1 1 2 1 1
Alpha‐1‐antitrypsin deficiency (A1ATD) SERPINA1 AR 9 16 14 18 9 8
Alport syndrome, autosomal dominant COL4A3 AR 1 4 0 0 0 0
Alport syndrome, X‐linked (ATS) COL4A5 XL 8 16 15 22 10 9
Alzheimer disease 3 PSEN1 AD 2 3 3 6 3 3
Alzheimer disease 4 PSEN2 AD 1 1 1 2 0 0
Alzheimer disease (AD) APP AD 2 3 2 4 2 1
Amegakaryocytic thrombocytopenia, congenital (CAMT) MPL AR 1 1 0 0 0 0
Amyloidosis, hereditary, transthyretin‐related TTR AD 3 7 5 6 3 2
Amyotrophic lateral sclerosis 1 (ALS1) SOD1 XL 2 2 2 3 2 1
Amyotrophic lateral sclerosis 4, juvenile (ALS4) SETX AD 1 1 1 1 1 1
Anemia, nonspherocytic hemolytic, due to g6pd deficiency G6PD XL 9 12 12 15 6 6
Angelman syndrome (AS) UBE3A AD 2 2 2 3 1 1
Angioedema, hereditary, type i (HAE1) C1NH AD 3 4 3 4 1 1
Aniridia (AN) PAX6 AD 4 7 5 6 4 4
Aortic valve disease 1 (AOVD1) NOTCH1 AD 1 1 2 2 1 1
Argininosuccinic aciduria ASL AR 2 3 3 4 1 1
Arterial tortuosity syndrome (ATS) SLC2A10 AR 1 2 2 2 1 1
Arthrogryposis, distal, type 2a (DA2a) MYH3 AD 1 2 2 2 1 1
Arthrogryposis, distal, type 2b (DA2b) TNNI2 AD 1 2 1 1 0 0
Arthrogryposis, distal, type 2b (DA2b) TNNT3 AD 1 3 2 3 2 1
Arthrogryposis, distal, type 9 (DA9) FBN2 AD 1 2 2 2 2 2
Ataxia‐telangiectasia (AT) ATM AD 5 12 7 8 6 5
Auriculocondylar syndrome 2 (ARCND2) PLCB4 AR 1 1 0 0 0 0
Axenfeld–rieger syndrome, type 1 (RIEG1) PITX2 AD 3 13 13 15 5 4
Bardet–Biedl syndrome 10 (BBS10) BBS10 AR 1 2 3 4 1 1
Bardet–Biedl syndrome 2 (BBS2) BBS2 AR 1 1 2 2 2 1
Bardet–Biedl syndrome 4 (BBS4) BBS4 AR 1 1 2 2 1 1
Bartter syndrome, type 3 (BARTS3) CLCNKB AR 1 1 2 2 1 1
Basal cell nevus syndrome (BCNS) (Gorlin) PTCH1 AD 6 7 6 10 4 4
Benign chronic pemphigus (BCPM) ATP2C1 AD 1 1 1 1 1 0
Beta‐ureidopropionase deficiency (UPB1D) UPB1 AR 1 1 2 2 2 1
Biotinidase deficiency BTD AR 3 5 2 3 2 2
Birt–Hogg–Dube syndrome (BHD) FLCN AD 1 2 1 1 1 1
Bleeding disorder, platelet‐type, 16 (BDPLT16) ITGB3 AD 1 1 0 0 0 0
Blepharophimosis, ptosis, and epicanthus inversus (BPES) FOXL2 AD 3 7 5 7 3 3
Blood group – Kell–Cellano system KEL AR 14 32 19 32 5 5
Brachydactyly, type B1 (BDB1) ROR2 AD 1 3 2 4 2 2
Branchiooculofacial syndrome (BOFS) TFAP2A AD 1 1 1 2 0 0
Breast cancer PALB2 AD 2 4 2 2 1 1
Breast–ovarian cancer, familial, susceptibility to, 1 (BROVCA1) BRCA1 AD 93 175 128 183 89 83
Breast–ovarian cancer, familial, susceptibility to, 2 (BROVCA2) BRCA2 AD 64 123 87 122 55 51
Campomelic dysplasia with autosomal sex reversal SOX9 AD 1 1 0 0 0 0
Camurati–Engelmann disease (CAEND) TGFB1 AD 1 1 1 1 0 0
Canavan disease ASPA AR 4 6 5 7 5 5
Carbamoyl phosphate synthetase i deficiency CPS1 AR 1 1 1 2 0 0
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1 SCO2 AR 2 5 5 10 3 3
Cardiomyopathy, dilated, 1A (CMD1A) LMNA AR 7 17 16 25 10 8
Cardiomyopathy, dilated, 1DD (CMD1DD) RBM20 AD 1 2 2 2 2 2
Cardiomyopathy, dilated, 1E (CMD1E) SCN5A AD 1 2 2 2 1 1
Cardiomyopathy, dilated, 1G (CMD1G) TTN AD 2 2 3 3 1 1
Cardiomyopathy, dilated, 1S (CMD1S) MYH7 AD 3 6 4 4 2 2
Cardiomyopathy, dilated, with woolly hair, keratoderma, and tooth agenesis (DCWHKTA) DSP AD 2 3 2 3 2 1
Cardiomyopathy, familial hypertrophic, 2 (CMH2) TNNT2 AD 1 2 1 1 1 0
Cardiomyopathy, familial hypertrophic, 4 (CMH4) MYBPC3 AD 14 22 16 23 11 9
Cardiomyopathy, familial hypertrophic, 7 (CMH7) TNNI3 AD 1 1 1 1 0 0
Cardiomyopathy, familial hypertrophic, 8 (CMH8) MYL3 AD 1 2 0 0 0 0
Carnitine deficiency, systemic primary (CDSP) SLC22A5 AR 1 2 1 2 1 1
Carnitine palmitoyltransferase II deficiency, infantile CPT2 AR 4 7 4 4 2 2
Cerebral arteriopathy, autosomal dominant NOTCH3 AD 3 7 6 6 6 4
Cerebral creatine deficiency syndrome 1 (CCDS1) SLC6A8 XL 1 1 1 2 1 1
Ceroid lipofuscinosis, neuronal 2, late infantile (CLN2) TPP1 AR 2 3 2 2 2 1
Ceroid lipofuscinosis, neuronal, 10 (CLN10) CTSD AR 1 1 2 3 1 1
Ceroid lipofuscinosis, neuronal, 5 (CLN5) CLN5 AR 1 1 2 3 0 0
Ceroid lipofuscinosis, neuronal, 6 (CLN6) CLN6 AR 2 2 1 2 0 0
Charcot–Marie–Tooth disease, axonal, type 2A2 (CMT2A2) MFN2 AD 2 9 6 7 2 2
Charcot–Marie–Tooth disease, axonal, type 2B (CMT2B) RAB7A AD 1 1 2 4 2 1
Charcot–Marie–Tooth disease, axonal, type 2E (CMT2E) NEFL AD 1 4 4 7 1 1
Charcot–Marie–Tooth disease, axonal, type 2F (CMT2F) HSPB1 AD 1 1 1 1 0 0
Charcot–Marie–Tooth disease, demyelinating, type 1A (CMT1A) PMP22 AD 28 56 38 51 25 21
Charcot–Marie–Tooth disease, demyelinating, type 1B (CMT1B) MPZ AD 2 5 2 5 0 0
Charcot–Marie–Tooth disease, X‐linked, 1 (CMTX1) GJB1 XL 6 9 9 14 5 5
Cholestasis, benign recurrent intrahepatic, 2 (BRIC2) ABCB11 AR 1 2 2 4 1 1
Cholestasis, progressive familial intrahepatic, 3 (PFIC3) ABCB4 AR 1 1 1 2 1 1
Chondrodysplasia punctata 1, X‐linked recessive (CDPX1) ARSE XL 1 2 2 3 0 0
Choroideremia (CHM) CHM XL 3 5 5 9 3 3
Ciliary dyskinesia, primary, 15 (CILD15) CCDC40 AR 1 1 1 1 1 1
Ciliary dyskinesia, primary, 3 (CILD3) DNAH5 AR 2 2 1 2 1 1
Citrullinemia, classic ASS1 AR 4 7 6 8 3 3
Cleidocranial dysplasia (CCD) RUNX2 AD 1 3 5 5 2 2
Cockayne syndrome A (CSA) ERCC8 AR 1 1 2 2 1 1
Coenzyme Q10 deficiency, primary, 7 (COQ10D7) COQ4 AR 1 1 1 1 1 1
Cohen syndrome (COH1) VPS13B AR 2 2 2 4 2 2
Colorectal cancer, hereditary nonpolyposis, type 1 (HNPCC1) MSH2 AD 11 21 14 17 7 6
Colorectal cancer, hereditary nonpolyposis, type 2 (HNPCC2) MLH1 AD 10 18 15 25 9 9
Colorectal cancer, hereditary nonpolyposis, type 4 (HNPCC4) PMS2 AD 1 2 1 1 0 0
Colorectal cancer, hereditary nonpolyposis, type 5 (HNPCC5) MSH6 AD 5 10 8 11 5 5
Combined oxidative phosphorylation deficiency 13 (COXPD13) PNPT1 AR 1 1 3 5 0 0
Cone–rod dystrophy 6 (CORD6) GUCY2D AD 1 1 1 0 0 0
Congenital disorder of deglycosylation (CDDG) NGLY1 AR 1 1 2 2 1 1
Congenital disorder of glycosylation, type Ia (CDG1A) PMM2 AR 5 5 4 4 3 3
Congenital disorder of glycosylation, type IIc (CDG2C) SLC35C1 AR 1 1 2 3 0 0
Congenital disorder of glycosylation, type IIL (CDG2L) COG6 AR 1 2 2 2 0 0
Congenital disorder of glycosylation, type In (CDG1N) RFT1 AR 2 2 2 4 1 1
Cranioectodermal dysplasia 2 (CED2) WDR35 AR 1 1 1 1 1 1
Craniofrontonasal syndrome (CFNS) EFNB1 XL 1 1 1 1 0 0
Creutzfeldt–Jakob disease (CJD); Gerstmann–Straussler disease (GSD) PRNP AD 6 9 9 12 8 7
Crouzon syndrome FGFR2 AD 8 16 14 23 9 8
Currarino syndrome MNX1 AD 1 1 1 2 1 1
Cutis laxa, autosomal dominant 1 (ADCL1) ELN AD 1 4 3 4 2 2
Cutis laxa, autosomal recessive, type IIB (ARCL2B) PYCR1 AR 1 1 2 2 1 1
Cutis laxa, autosomal recessive, type IIIA (ARCL3A) ALDH18A1 AR 1 1 1 1 1 1
Cystic fibrosis (CF) CFTR AR 496 748 627 1072 354 314
Cystinosis, nephropathic (CTNS) CTNS AR 1 1 1 1 0 0
Danon disease LAMP2 XL 1 2 2 2 2 2
Darier–White disease (DAR) ATP2A2 AD 1 1 1 1 1 1
D‐bifunctional protein deficiency HSD17B4 AR 1 1 1 1 0 0
Deafness, autosomal dominant 3b (DFNA3b) GJB6 AD 1 2 2 3 1 1
Deafness, neurosensory, autosomal recessive 1 (DFNB1) GJB2 AR 51 68 56 80 33 30
Dentinogenesis imperfecta, shields type III DSPP AD 1 2 2 2 2 1
Developmental delay DHX35 AR 1 1 2 2 1 1
Diabetes insipidus, nephrogenic, X‐linked AVPR2 XL 1 3 3 3 1 1
Diabetes mellitus, permanent neonatal (PNDM) INS AD 1 1 1 1 1 1
Diamond–Blackfan anemia 1 (DBA1) RPS19 AD 1 1 1 2 1 1
Digeorge syndrome (DGS) TBX1 AD 1 1 1 1 1 1
Dihydrolipoamide dehydrogenase deficiency (DLDD) DLD AR 1 1 1 1 1 1
Donnai–Barrow syndrome LRP2 AR 1 1 0 0 0 0
Dyskeratosis congenita, autosomal dominant 3 (DKCA3) TINF2 AD 1 2 2 3 1 1
Dyskeratosis congenita, autosomal dominant 2 (DKCA2) TERT AD 1 3 1 1 0 0
Dyskeratosis congenita, autosomal recessive 5 (DKCB5) RTEL1 AR 1 1 2 2 1 1
Dyskeratosis congenita, X‐linked (DKCX) DKC1 XL 1 1 1 2 1 1
Dyskinesia, seizures, and intellectual developmental disorder (DYSEIDD) DEAF1 AR 1 1 1 1 0 0
Dystonia 1, torsion, autosomal dominant (DYT1) TOR1A AD 16 36 35 63 18 18
Dystonia 28, childhood‐onset (DYT28) KMT2B AD 1 1 1 1 0 0
Dystonia 3, torsion, X‐linked (DYT3) TAF1 XL 1 1 1 2 1 1
Ectodermal dysplasia 10b, hypohidrotic/hair/tooth type, autosomal recessive (ECTD10B) EDAR AR 1 1 1 2 1 1
Ectodermal dysplasia, hypohidrotic, X‐linked (XHED) EDA XL 6 8 8 10 4 4
Ehlers–Danlos syndrome, classic type COL5A1 AD 2 4 3 4 3 2
Ehlers–Danlos syndrome, type IV, autosomal dominant COL3A1 AD 4 6 4 7 4 3
Ehlers–Danlos syndrome, type VI (EDS6) PLOD1 AR 1 1 2 3 0 0
Emery–Dreifuss muscular dystrophy 1, X‐linked (EDMD1) EMD XL 3 4 4 7 3 3
Epidermolysis bullosa dystrophica, autosomal dominant (DDEB) COL7A1 AR 8 9 8 13 4 4
Epidermolysis bullosa simplex with pyloric atresia (EBSPA) PLEC1 AR 1 2 1 3 1 1
Epidermolysis bullosa simplex, dowling‐meara type (EBSDM) KRT5 AD 1 2 1 2 1 1
Epidermolysis bullosa, junctional, Herlitz type LAMA3 AR 4 9 7 13 7 7
Epidermolysis bullosa, junctional, non‐herlitz type LAMB3 AR 5 6 5 9 2 2
Epidermolytic hyperkeratosis (EHK) KRT10 AD 2 3 2 2 2 2
Epileptic encephalopathy, early infantile, 2 (EIEE2) CDKL5 XL 1 1 1 2 1 1
Epileptic encephalopathy, early infantile, 3 (EIEE3) SLC25A22 AR 1 1 0 0 0 0
Epileptic encephalopathy, early infantile, 5 (EIEE5) SPTAN1 AR 1 1 0 0 0 0
Epiphyseal dysplasia, multiple, 1 (EDM1) COMP AD 3 4 2 2 1 1
Exostoses, multiple, type I EXT1 AD 11 21 17 29 12 10
Exostoses, multiple, type II EXT2 AD 3 8 6 10 3 3
Fabry disease GLA XL 12 19 14 22 9 7
Facioscapulohumeral muscular dystrophy 1 (FSHD1) FRG1 AD 25 51 42 71 23 20
Factor VII deficiency F7 AR 1 1 1 1 0 0
Familial adenomatous polyposis 1 (FAP1) APC AD 23 44 36 57 17 15
Familial cold autoinflammatory syndrome 1 (FCAS1) NLPR3 AD 1 1 1 1 1 1
Familial Mediterranean fever (FMF) MEFV AR 10 18 16 22 11 8
Fanconi anemia, complementation group A (FANCA) FANCA AR 2 5 2 3 2 2
Fanconi anemia, complementation group C (FANCC) FANCC AR 2 5 4 8 1 1
Fetal akinesia deformation sequence (FADS) NUP88 AR 1 1 1 2 1 1
Fetal akinesia deformation sequence (FADS) RAPSN AR 1 1 1 2 1 0
Fragile‐X mental retardation syndrome FMR1 XL 312 608 450 662 243 214
Fraser syndrome 1 (FRASRS1) FRAS1 AR 2 2 2 2 1 1
Friedreich ataxia 1 (FRDA) FXN AR 2 6 4 7 2 2
Frontotemporal dementia and/or amyotrophic lateral sclerosis 1 (FTDALS1) c9orf72 AD 1 1 1 1 1 1
Fructose intolerance, hereditary ALDOB AR 2 7 6 7 3 3
Fumarase deficiency (FMRD) FH AR 1 1 0 0 0 0
Galactosemia GALT AR 3 7 5 6 2 2
Gastric cancer, hereditary diffuse (HDGC) CDH1 AD 1 1 1 2 1 1
Gaucher disease, type I GBA XL 39 52 34 57 24 19
Geroderma osteodysplasticum (GO) GORAB AR 1 2 2 4 1 1
Gitelman syndrome (GTLMNS) SLC12A3 AR 1 1 1 1 0 0
Glaucoma 3, primary congenital, A (GLC3A) CYP1B1 AR 1 1 2 2 1 1
Glut1 deficiency syndrome 1 (GLUT1DS1) SLC2A1 AD 1 2 1 2 0 0
Glutaric acidemia I GCDH AR 1 1 1 2 0 0
Glycine encephalopathy (GCE) GLDC AR 6 7 6 11 6 6
Glycogen storage disease Ia (GSD1A) G6PC AR 1 1 2 2 0 0
Glycogen storage disease II (GSD2) GAA AR 5 7 4 9 1 1
Glycogen storage disease IXa1 (GSD9A1) PHKA2 XL 1 1 0 0 0 0
Glycogen storage disease VII (GSD7) PFKM AR 1 1 1 1 1 1
Gm1‐gangliosidosis, type I GLB1 AR 5 5 5 10 4 4
Granulomatous disease, chronic, X‐linked (CDGX) CYBB XL 4 5 4 6 3 2
Greig cephalopolysyndactyly syndrome (GCPS) GLI3 AD 1 1 2 2 0 0
Harel–Yoon syndrome (HAYOS) ATAD3A AR 1 3 3 3 1 1
Hemoglobin‐alpha locus 1 (HBA1) HBA AR 14 23 21 38 10 10
Hemoglobin‐beta locus (HBB) HBB AR 301 470 402 762 192 161
Hemophagocytic lymphohistiocytosis, familial, 2 (FHL2) PRF1 AR 1 1 0 0 0 0
Hemophagocytic lymphohistiocytosis, familial, 3 (FHL3) UNC13D AR 3 4 4 5 4 3
Hemophilia A (HEMA) F8 XL 62 103 88 145 50 42
Hemophilia B (HEMB) F9 XL 5 6 6 9 6 6
Hereditary leiomyomatosis and renal cell cancer (HLRCC) FH AD 1 1 1 2 0 0
Hereditary motor and sensory neuropathy, type IIC (HMSN2C) TRPV4 AD 1 1 2 2 1 1
Hermansky–Pudlak syndrome 1 (HPS1) HPS1 AR 1 4 3 6 2 2
HLA + myelodysplastic syndrome (MDS) GATA2 AD 1 2 1 1 1 1
HLA + Shwachman–Diamond syndrome (SDS) SBDS AR 4 10 3 4 2 2
HLA + adenosine deaminase deficiency (ADA) ADA AR 1 1 1 1 1 1
HLA + adrenoleukodystrophy ABCD1 XL 3 7 2 2 1 1
HLA + Diamond–Blackfan anemia 1 (DBA1) RPS19, AD 6 13 10 15 5 5
HLA + Diamond–Blackfan anemia 2 (DBA2) RPS20 AD 1 1 1 1 1 1
HLA + Diamond–Blackfan anemia 3 (DBA3) RPS 24 AD 1 1 1 1 0 0
HLA + Diamond–Blackfan anemia 5 (DBA5) RPL35A AD 1 1 1 1 1 1
HLA + Diamond–Blackfan anemia 9 (DBA9) RPS10 AD 1 1 2 2 1 1
HLA + ectodermal dysplasia, hypohidrotic, with immune deficiency IKBKG XL 2 9 6 8 2 2
HLA + Fanconi anemia, complementation group A (FANCA) FANCA AR 18 52 29 43 14 10
HLA + Fanconi anemia, complementation group C (FANCC) FANCC AR 2 5 5 8 1 1
HLA + Fanconi anemia, complementation group D2 (FANCD2) FANCD2 AR 1 3 2 3 1 1
HLA + Fanconi anemia, complementation group F (FANCF) FANCF AR 2 5 2 3 0 0
HLA + Fanconi anemia, complementation group G (FANCG) FANCG AR 2 2 2 3 2 2
HLA + Fanconi anemia, complementation group I (FANCI) FANCI AR 1 2 2 3 0 0
HLA + Fanconi anemia, complementation group J (FANCJ) BRIP1 AR 1 1 1 1 1 1
HLA + Fanconi anemia, complementation group JI (FANCJ) BRIP1 AR 1 3 1 3 0 0
HLA + Glanzmann thrombasthenia (GT, +DMD) ITGA2B DMD 1 2 2 4 1 0
HLA + granulomatous disease, chronic, autosomal recessive, cytochrome b‐positive, type I (CDG1) NCF1 AR 1 3 2 2 1 1
HLA + granulomatous disease, chronic, X‐linked (CDGX) CYBB XL 6 16 13 17 7 6
HLA + hemoglobin‐beta locus (HBB) HBB AR 92 188 119 177 41 31
HLA + hyper‐IgE recurrent infection syndrome, autosomal recessive DOCK8 AR 1 1 0 0 0 0
HLA + Krabbe disease GALC AR 1 1 1 2 1 1
HLA + myotonic dystrophy 1 (DM1) DMPK AD 1 2 1 2 1 1
HLA + neutropenia, severe congenital, 1, autosomal dominant (SCN1) ELANE AD 2 3 2 5 2 1
HLA + polycystic kidney disease 1 (PKD1) PKD1 AD 1 1 1 2 1 1
HLA + sickle cell anemia HBB AR 18 29 18 27 12 8
HLA + thrombocythemia 1 (THCYT1) SH2B3 AR 1 2 2 2 2 1
HLA + thrombotic thrombocytopenic purpura, congenital (TTP) ADAMTS13 AR 1 2 2 4 1 1
HLA + Wiskott–Aldrich syndrome (WAS) WAS XL 1 1 0 0 0 0
HLA immunodeficiency with hyper‐IgM, type 1 (HIGM1) CD40LG XL 8 15 9 13 5 4
HLA + pyruvate kinase deficiency of red cells PKLR AD 1 2 1 1 0 0
Holoprosencephaly 2 (HPE2) SIX3 AD 1 1 1 2 0 0
Holt–Oram syndrome (HOS) TBX5 AD 5 8 8 9 4 4
Homocystinuria due to cystathionine beta‐synthase deficiency CBS AR 4 6 4 9 3 3
Homocystinuria due to deficiency of n(5,10)‐methylenetetrahydrofolate reductase activity MTHFR AR 1 1 1 2 0 0
Homocystinuria‐megaloblastic anemia, cblG complementation type (HMAG) MTR AR 1 2 1 1 0 0
Human leukocyte antigens HLA AR 60 119 73 108 25 20
Huntington disease (HD) HTT AD 141 209 171 267 107 97
Hurler syndrome IDUA AR 7 10 8 13 3 3
Hyaline fibromatosis syndrome (HFS) ANTXR2 AR 1 1 1 2 1 1
Hydrocephalus due to congenital stenosis of aqueduct of Sylvius (HSAS) L1CAM XL 11 16 16 34 8 6
Hydroxyacyl‐CoA dehydrogenase/3‐ketoacyl‐CoA thiolase/enoyl‐CoA hydratase, alpha subunit (HADHA) HADHA AR 4 4 4 13 3 3
Hyperinsulinemic hypoglycemia, familial, 1 (HHF1) ABCC8 AR 2 11 8 19 4 2
Hyperuricemic nephropathy, familial juvenile, 1 (HNFJ1) UMOD AD 1 1 1 1 0 0
Hypogonadotropic hypogonadism 1 with or without anosmia (HH1) ANOS1 XL 1 1 2 2 0 0
Hypogonadotropic hypogonadism 1 with or without anosmia (HH1) KAL1 XL 1 2 1 1 1 1
Hypoparathyroidism–retardation–dysmorphism syndrome (HRDS) TBCE 1R 1 1 1 2 0 0
Hypophosphatasia, infantile ALPL AR 6 7 6 9 4 4
Ichthyosis, congenital, autosomal recessive 1 (ARCI1) TGM1 AD 2 9 7 10 1 1
Ichthyosis, lamellar, 2 (LI2) ABCA12 AR 2 2 1 2 0 0
Ichthyosis, spastic quadriplegia, and mental retardation (ISQMR) ELOVL4 AR 1 1 1 1 0 0
Ichthyosis, X‐linked (XLI) STS XL 2 3 3 4 1 1
Ifap syndrome with or without Bresheck syndrome MBTPS2 XL 2 3 2 5 2 1
Immunodeficiency with hyper‐IgM, type 1 (HIGM1) CD40LG XL 4 14 14 22 6 6
Immunodysregulation, polyendocrinopathy, and enteropathy, X‐linked (IPEX) FOXP3 XL 2 3 3 3 1 1
Incontinentia pigmenti (IP) IKBKG XL 15 35 28 43 11 11
Infantile cerebellar‐retinal degeneration (ICRD) ACO2 AR 1 1 1 2 2 2
Infantile liver failure syndrome 1 (ILFS1) LARS AR 1 1 2 2 1 1
Isovaleric acidemia (IVA) IVD AR 1 1 1 2 0 0
Joubert syndrome 1 (JBTS1) INPP5E AR 1 1 2 2 1 1
Joubert syndrome 17 (JBTS17) CPLANE1 AD 1 1 1 2 1 1
Joubert syndrome 2 (JBTS2) TMEM216 AR 1 1 2 2 1 1
Joubert syndrome 21 (JBTS21) CSPP1 AR 2 5 4 7 1 1
Joubert syndrome 23 (JBTS23) KIAA0586 AR 1 1 1 2 1 1
Joubert syndrome 3 (JBTS3) AHI1 AR 1 1 0 0 0 0
Joubert syndrome 6 (JBTS6) TMEM67 AR 2 3 2 2 2 2
Krabbe disease GALC AR 11 12 11 19 7 5
Larsen syndrome (LRS) FLNB AD 2 2 1 1 1 1
Leber congenital amaurosis 2 (LCA2) RPE65 AR 1 1 0 0 0 0
Leigh syndrome (LS) NDUFS8 AR 1 1 0 0 0 0
Leigh syndrome (LS) SURF1 AR 1 1 1 3 0 0
Lesch–Nyhan syndrome (LNS) HPRT1 XL 1 4 3 3 2 2
Leukoencephalopathy with vanishing white matter (VWM) EIF2B2 AR 1 1 1 2 1 0
Li–Fraumeni syndrome 1 (LFS1) TP53 AD 16 22 17 24 13 11
Lipoid congenital adrenal hyperplasia (LCAH) STAR AR 1 2 2 3 1 1
Lissencephaly, X‐linked, 2 (LISX2) ARX XL 1 1 1 2 0 0
Loeys–Dietz syndrome 1 (LDS1) TGFBR2 AD 2 5 4 6 2 1
Long QT syndrome 1 (LQT1) KCNQ1 AD 4 5 2 2 2 2
Long QT syndrome 2 (LQT2) KCNH2 AD 3 3 2 2 1 1
Long QT syndrome 8 (LQT8) CACNA1C AD 1 1 1 1 1 1
Lymphedema, hereditary, III (LMPH3) PIEZO1 AR 1 1 0 0 0 0
Lymphoproliferative syndrome, X‐linked, 1 (XLP1) SH2D1A XL 1 1 2 3 2 2
Lysosomal acid lipase deficiency LIPA AR 2 2 2 4 2 2
Machado–Joseph disease (MJD) ATXN3 AD 4 7 6 8 6 6
Macular dystrophy, vitelliform, 2 (VMD2) BEST1 AD 1 1 1 1 1 1
Maple syrup urine disease (MSUD) BCKDHB AR 1 2 2 2 1 1
Marfan syndrome (MFS) FBN1 AD 30 58 46 78 27 21
Marinesco–Sjogren syndrome (MSS) SIL1 AR 1 3 3 5 1 1
Meckel syndrome, type 1 (MKS1) MKS1 AR 2 5 5 9 2 2
Meckel syndrome, type 4 (MKS4) CEP290 4 6 6 10 4 4
Meckel syndrome, type 6 (MKS6) CC2D2A AR 2 5 5 9 2 2
Meckel syndrome, type 6 (MKS6) CCD2DA2 AR 1 1 1 2 1 1
Meckel syndrome, type 8 (MKS8) TCTN2 AR 1 1 2 2 1 1
Mental retardation, autosomal dominant 35 (MRD35) PPP2R5 AD 1 1 2 2 1 1
Mental retardation, autosomal recessive 38 (MRT38) HERC2 AR 1 2 2 3 1 1
Metachromatic leukodystrophy due to saposin B deficiency PSAP AR 1 1 0 0 0 0
Metachromatic leukodystrophy (MLD) ARSA AR 3 4 3 4 4 2
Metaphyseal chondrodysplasia, Schmid type (MCDS) COL10A1 AD 2 7 3 4 2 2
Methylmalonic aciduria and homocystinuria, cblC type MMACHC AR 3 6 6 11 5 5
Methylmalonic aciduria due to methylmalonyl‐CoA mutase deficiency MUT AR 2 4 4 4 2 2
Methylmalonic aciduria, cblB type MMAB AR 3 3 2 3 1 1
Microcephalic osteodysplastic primordial dwarfism, type I (MOPD1) RNU4ATAC AR 1 1 1 1 1 1
Microcephaly 2, primary, autosomal recessive (MCPH2) WDR62 AR 1 1 1 1 0 0
Microcephaly 5, primary, autosomal recessive (MCPH5) ASPM AR 2 3 2 3 2 2
Microcephaly 6, primary, MCPH6) CENPJ AR 1 2 2 2 1 1
Microphthalmia, isolated, with coloboma 3 (MCOPCB3) VSX2 AR 2 2 1 1 1 1
Midface hypoplasia, hearing impairment, elliptocytosis, and nephrocalcinosis (MFHIEN) AMMECR1 XL 2 8 6 9 2 2
Migraine, familial hemiplegic, 1 (FHM1) CACNA1A AD 1 1 1 2 1 1
Mitochondrial complex i deficiency due to acad 9 deficiency ACAD9 AR 1 1 1 2 1 1
Mitochondrial DNA depletion syndrome 13 FBXL4 AD 1 1 3 4 1 1
Mitochondrial DNA depletion syndrome 4a (Alpers type) (MTDPS4A) POLG AR 3 5 5 5 4 4
Molybdenum cofactor deficiency, complementation group B (MOCODB) MOCS2 AR 1 1 3 4 0 0
Mosaic variegated aneuploidy syndrome 1 (MVA1) BUB1B AR 1 1 1 2 1 0
Mucolipidosis II alpha/beta GNPTAB AR 2 3 2 2 2 2
Mucopolysaccharidosis, type II (MPS2) IDS XL 9 20 15 29 10 6
Mucopolysaccharidosis, type IIIA (MPS3A) SGSH AR 2 2 2 3 0 0
Mucopolysaccharidosis, type IVA (MPS4A) GALNS AR 1 4 4 12 2 2
Multinucleated neurons, anhydramnios, renal dysplasia, cerebellar hypoplasia CEP55 AR 1 1 1 2 1 1
Multiple congenital anomalies–hypotonia–seizures syndrome 2 (MCAHS2) PIGA XL 1 1 0 0 0 0
Multiple endocrine neoplasia, type I (MEN1) MEN1 AD 8 21 16 23 7 4
Multiple endocrine neoplasia, type IIA (MEN2A) RET AD 6 11 11 17 8 8
Multiple endocrine neoplasia, type IV (MEN4) CDKN1B AD 1 3 1 1 1 1
Muscular dystrophy, congenital merosin‐deficient, 1A (MDC1A) LAMA2 AR 6 7 7 14 7 6
Muscular dystrophy, Duchenne type (DMD) DMD XL 69 115 103 169 57 48
Muscular dystrophy, limb‐girdle, type 2A (LGMD2A) CAPN3 AR 1 1 0 0 0 0
Muscular dystrophy, limb‐girdle, type 2S (LGMD2S) TRAPPC11 AR 1 1 2 2 2 2
Muscular dystrophy–dystroglycanopathy (congenital with brain and eye anomalies), type A, 5 (MDDGA5) FKRP AR 1 3 3 3 1 1
Muscular dystrophy–dystroglycanopathy (congenital with brain and eye anomalies), type A, 4 (MDDGA4) FKTN AR 2 2 2 3 2 2
Myoglobinuria, acute recurrent, autosomal recessive LPIN1 AR 1 1 1 1 1 1
Myopathy, areflexia, respiratory distress, and dysphagia, early‐onset (EMARDD) MEGF10 AR 1 1 1 1 1 1
Myopathy, centronuclear, X‐linked (CNMX) MTM1 XL 5 6 4 6 4 4
Myopathy, myofibrillar, 1 (MFM1) DES AD 1 1 1 1 1 1
Myotonia congenita, autosomal dominant CLCN1 AD 1 1 1 2 1 1
Myotonic dystrophy 1 (DM1) DMPK AD 94 147 107 188 55 46
Myotonic dystrophy 2 (DM2) CNBP AD 1 2 2 4 2 2
Nail–patella syndrome (NPS) LMX1B AD 3 4 3 4 1 1
Nemaline myopathy 2 (NEM2) NEB AR 6 6 6 10 3 3
Nephrotic syndrome, type 1 (NPHS1) NPHS1 AR 1 3 3 7 1 0
Nephrotic syndrome, type 2 (NPHS2) NPHS2 AR 1 1 1 1 1 1
Nephrotic syndrome, type 5 LAMB2 AR 1 2 2 4 2 1
Neurofibromatosis, type I (NF1) NF1 AD 51 90 80 123 46 41
Neurofibromatosis, type II (NF2) NF2 AD 7 10 9 17 7 7
Neuropathy, hereditary sensory and autonomic, type III (HSAN3) IKBKAP AR 13 19 17 28 9 9
Neuropathy, hereditary sensory and autonomic, type VI (HSAN6) DST AD 1 2 2 2 2 2
Neutropenia, severe congenital, 1, autosomal dominant (SCN1) ELANE AD 1 1 1 1 1 1
Niemann–Pick disease, type A SMPD1 AR 3 5 3 6 2 2
Nijmegen breakage syndrome (NBS) NBN AR 1 1 2 2 1 1
Noonan syndrome 1 (NS1) PTPN11 AD 5 7 7 9 4 3
Norrie disease (ND) NDP XL 5 8 6 12 2 2
Omenn syndrome RAG1 AD 2 6 5 12 1 1
Optic atrophy 1 (OPA1) OPA1 AD 3 5 5 9 1 1
Ornithine transcarbamylase deficiency OTC XL 11 24 19 32 11 10
Osteogenesis imperfecta, type I (OI1) COL1A1 AD 24 61 44 72 17 17
Osteogenesis imperfecta, type II (OI2) COL1A2 AD 5 5 5 5 3 2
Osteogenesis imperfecta, type IX (OI9) PPIB AR 1 2 2 4 2 2
Osteopathia striata with cranial sclerosis (OSCS) AMER1 XL 1 1 1 1 1 1
Osteopetrosis, autosomal recessive 1 (OPTB1) TCIRG1 AR 5 7 7 13 3 3
Pachyonychia congenita 3 (PC3) KRT6A AD 1 2 2 2 2 1
Pancreatitis, hereditary (PCTT) PRSS1 AD 1 1 1 2 1 1
Paraganglioma and gastric stromal sarcoma SDHB AD 1 1 0 0 0 0
Paramyotonia congenita of von Eulenburg (PMC) SCN4A AD 3 3 3 4 3 2
Pelizaeus–Merzbacher disease (PMD) PLP1 XL 7 12 10 15 7 7
Periventricular nodular heterotopia 1 (PVNH1) FLNA XL 1 3 3 5 2 1
Peroxisome biogenesis disorder 1A (Zellweger) (PBD1A) PEX1 AR 3 3 3 6 3 3
Peroxisome biogenesis disorder 2A (Zellweger) (PBD2A) PEX5 AR 1 2 2 4 0 0
Peroxisome biogenesis disorder 3A (Zellweger) (PBD3A) PEX12 AR 1 3 3 4 2 1
Peroxisome biogenesis disorder 5A (Zellweger) (PBD5A) PEX2 AR 1 4 3 5 2 2
Peutz–Jeghers syndrome (PJS) STK11 AD 4 9 7 9 6 4
Pfeiffer syndrome FGFR1 AD 2 2 2 4 2 2
Phenylketonuria (PKU) PAH AR 15 20 14 16 8 7
Platelet disorder, familial, with associated myeloid malignancy (FPDMM) RUNX1 AD 1 1 1 1 1 1
Pleuropulmonary blastoma (PPB) DICER1 AD 1 1 1 1 1 1
Polycystic kidney disease 1 (PKD1) PKD1 AD 48 84 64 98 37 34
Polycystic kidney disease 2 (PKD2) PKD2 AD 7 10 9 15 3 3
Polycystic kidney disease, autosomal recessive (ARPKD) PKHD1 AR 16 29 26 42 17 16
Polymicrogyria, bilateral frontoparietal (BFPP) ADGRG1 AR 2 2 1 2 1 1
Polymicrogyria, bilateral frontoparietal (BFPP) GPR56 AR 1 1 1 2 0 0
Pontocerebellar hypoplasia, type 1B (PCH1B) EXOSC3 AR 1 1 2 2 1 1
Popliteal pterygium syndrome (PPS) IRF6 AD 2 2 1 2 1 1
Porphyria, congenital erythropoietic UROS AR 1 1 1 1 1 1
Propionic acidemia PCCA, AR 3 3 3 5 2 2
PCCB
Prothrombin deficiency, congenital; F2 F5 AR 2 3 3 3 2 2
Factor V deficiency
Pseudovaginal perineoscrotal hypospadias (PPSH) SRD5A2 AR 1 2 2 4 1 1
Rap guanine nucleotide exchange factor 6 (RAPGEF6) RAPGEF6 AD 1 2 3 4 3 1
Renal cell carcinoma, papillary, 1 (RCCP1) MET AD 1 1 2 2 1 1
Renal tubular acidosis, distal, autosomal recessive (RTADR) ATP6V0A4 AR 1 1 2 3 2 1
Renal tubular dysgenesis (RTD) ACE AR 1 4 3 4 2 2
Restrictive dermopathy, lethal ZMPSTE24 AR 2 2 2 3 1 1
Retinal dystrophy, early‐onset, with or without pituitary dysfunction, included OTX2 AD 1 1 0 0 0 0
Retinitis pigmentosa 2 (RP2) RP2 XL 1 1 1 2 1 1
Retinitis pigmentosa 3 (RP3) RPGR XL 5 6 6 8 4 3
Retinitis pigmentosa 4 (RP4) RHO AD 3 5 2 4 1 0
Retinoblastoma (RB1) RB1 AD 17 31 26 43 14 13
Retinoschisis 1, X‐linked, juvenile (RS1) RS1 XL 1 2 1 2 1 0
Rett syndrome (RTT) MECP2 XL 3 5 4 4 3 1
Rhabdoid tumor predisposition syndrome 1 (RTPS1) SMARCB1 AD 1 1 1 1 0 0
Rhesus blood group, D antigen (RHD) RHD AD 7 9 9 16 6 6
Sandhoff disease HEXB AR 4 6 5 8 4 4
Seckel syndrome 1 (SCKL1) ATR AR 1 1 2 2 0 0
Severe combined immunodeficiency, autosomal recessive IL7R AR 1 1 2 4 1 1
Severe combined immunodeficiency, autosomal recessive RAG2 AR 2 5 4 5 3 3
Severe combined immunodeficiency, X‐linked (SCIDX1) IL2RG XL 3 4 3 3 2 2
Short stature, idiopathic, X‐linked (ISS) SHOX XL 2 2 2 3 2 2
Short‐rib thoracic dysplasia 3 with or without polydactyly (SRTD3) DYNC2H1 AR 1 1 1 1 1 1
Smith–Lemli–Opitz syndrome (SLOS) DHCR7 AR 18 30 23 32 15 15
Sonic hedgehog (SHH) SHH AD 1 2 2 3 1 1
Sotos syndrome 1 (SOTOS1) NSD1 AD 2 3 2 2 2 2
Spastic paraplegia 3, autosomal dominant (SPG3A) ATL1 AD 1 1 1 1 1 1
Spastic paraplegia 4, autosomal dominant (SPG4) SPAST AD 6 10 8 12 7 5
Spherocytosis, type 2 (SPH2) SPTB AD 1 1 2 2 2 1
Spinal and bulbar muscular atrophy, X‐linked 1 (SMAX1) AR XL 3 5 5 6 2 1
Spinal muscular atrophy, distal, autosomal recessive, 1 (DSMA1) IGHMBP2 AR 2 3 2 4 1 1
Spinal muscular atrophy, type I (SMA1) SMN1 AR 102 151 125 199 78 69
Spinocerebellar ataxia 1 (SCA1) ATXN1 AD 4 7 6 8 4 4
Spinocerebellar ataxia 2 (SCA2) ATXN2 AD 7 14 14 27 6 8
Spinocerebellar ataxia 6 (SCA6) CACNA1A AD 2 5 2 3 1 1
Spinocerebellar ataxia 7 (SCA7) ATXN7 AD 2 3 3 7 2 1
Spinocerebellar ataxia 8 (SCA8) ATXN80S AD 1 1 1 1 1 1
Spondyloepiphyseal dysplasia tarda, X‐linked (SEDT) TRAPPC2 AD 1 1 2 2 1 1
Stargardt disease 1 (STGD1) ABCA4 AR 4 10 5 6 2 2
Stickler syndrome, type I (STL1) Col2A1 AD 4 4 3 5 2 2
Stickler syndrome, type II (STL2) COL11A1 AD 2 7 6 15 1 1
Stickler syndrome, type II (STL2) COL18A1 AR 1 1 1 1 1 1
Succinic semialdehyde dehydrogenase deficiency (SSADHD) ALDH5A1 AR 3 4 4 9 2 2
Sulfocysteinuria SUOX AR 1 1 2 2 1 1
Supranuclear palsy, progressive, 1 (PSNP1) MAPT AD 2 3 3 5 1 1
Surfactant metabolism dysfunction, pulmonary, 3 (SMDP3) ABCA3 AR 1 2 2 4 1 1
Symphalangism, proximal (SYM1) NOG AD 1 3 3 7 2 2
Tay–Sachs disease (TSD) HEXA AR 25 46 29 52 19 17
Telangiectasia, hereditary hemorrhagic, of Rendu, Osler, and Weber (HHT) ENG AD 4 11 6 7 3 3
Telangiectasia, hereditary hemorrhagic, type 2 (HHT2) ACVRL1 AD 4 8 7 8 4 4
Temtamy syndrome (TEMTYS) C12orf57 AR 1 1 1 2 0 0
Thrombocytopenia‐absent radius syndrome (TAR) RBM8A AR 4 6 5 7 4 4
Treacher Collins syndrome 1 (TCS1) TCOF1 AD 6 8 8 14 7 7
Treacher Collins syndrome 2 (TCS2) POLR1D AD 1 1 1 1 0 0
Tuberous sclerosis 1 (TSC1) TSC1 AD 20 30 27 52 16 14
Tuberous sclerosis 2 (TSC2) TSC2 AD 8 14 10 14 5 4
Tyrosinemia, type I (TYRSN1) FAH AR 1 7 7 13 5 3
Ulnar–Mammary syndrome (UMS) TBX3 AD 1 3 3 4 1 1
Usher syndrome, type I (USH1) MYO7A AD 1 3 2 2 1 1
Usher syndrome, type IF (USH1F) PCDH15 AR 2 4 4 6 4 2
Usher syndrome, type IIA (USH2A) USH2A AR 3 4 5 6 2 2
Usher syndrome, type IIC (USH2C) ADGRV1 AR 1 1 1 2 1 1
Usher syndrome, type IIC (USH2C) GPR98 AR 1 1 0 0 0 0
Van der Woude syndrome 1 (VWS1) IRF6 AD 3 3 3 3 3 3
Von Hippel–Lindau syndrome (VHL) VHL AD 19 25 21 30 15 14
Waardenburg syndrome, type 2A (WS2A) MITF AD 2 6 6 6 4 4
Wilson disease ATP7B AR 3 3 3 5 3 2
Wiskott–Aldrich syndrome (WAS) WAS XL 6 15 13 20 9 8
Wolfram syndrome 1 (WFS1) WFS1 AR 1 2 1 1 1 1
Xeroderma pigmentosum, complementation group g (XPG) ERCC5 AR 1 1 0 0 0 0
TOTAL 3463 5869 4683 7443 2644 2332
1.59 56.4%
Genetic Disorders and the Fetus

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