Читать книгу Genotyping by Sequencing for Crop Improvement - Группа авторов - Страница 69

SNP seek database is a user‐friendly database that provides access to SNPs. Rice SNP seek database (www.snp‐seek.irri.org) contains SNP genotyping data for 3K rice varieties obtained from 3000 Rice Genomes Projects (Locedie et al. 2016). About 20 million rice SNPs were identified from this Project for 3K rice variety sets against the reference Nipponbare genome (Alexandrov et al. 2015). We can use the interface to identify SNPs using gene ID (MSU locus name) or genomic region by specifying chromosome, start and end sites. This site also provides phenotype and variety information for 3K rice varieties from the International Rice Genebank Collection Information System (IRGCIS) (Locedie et al. 2016).