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The genome Variation Map (www.ngdc.cncb.ac.cn/gvm/home) is a data repository and retrieval system of genome variations in BIG Data Center (www.ngdc.cncb.ac.cn). It provides free open access to search for SNPs and short InDels from approximately 609 million genome variants for 25 plants, 13 animals, and 3 virus species. The current version of the Genome Var Map includes a total of 41 species, 202 projects, 64819 samples, 9 60 409 451 variants, 2 60 393 associations, and 95 submissions (Li et al. 2021). Users can retrieve variants by variation IDs, genomic coordinates, gene names, gene functions, and variant effects. The results can be downloaded directly in FASTA or VCF file formats.