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3.3.1 Effect of Plant Genotype on Rhizosphere Microbiome Assembly

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A large number of bacteria associated with the rhizosphere of plants produce phyto-therapeutic compounds that increase the growth of medicinal plants. Rhizosphere microbes of Matricaria chamomilla L., and Calendula officinalis L growing naturally in desert ecosystem showed abundant occurrence of bacteria (gram positive), which is very important for pathogens suppression. A large difference in endophytic bacterial diversity in medicinal plants, i.e., Lamiophlomis rotate, Codonopsis pilosula, and Ephedra sinica was recorded by Li et al. (2008). In contrast, different varieties of microbial groups are present in the soil. About 50 strains of 47 genera Stigmatella (1), Archangium (8), Myxococcus (18), Corallococcus (11), Cystobacter (7), Pyxidicoccus (1), with dominant genera of Corallococcus and Myxococcus. The incessant cropping of Rahmannia glutinossa decreases the productivity of some medicinal plants due to plant–microbe interaction activity in the rhizosphere (Qi et al. 2009). Different medicinal plant–microbe interactions in the rhizosphere is presented in Table 3.2.

Table 3.2 Rhizosphere Microbes Interactions in Medicinal Plants.

Plant species Microorganism References
Angelica sinensis Terriglobus saanensis, Mucilaginibacter polysacchareus, Mucilaginibacter myungsuensis, Mucilaginibacter ximonensis Whang et al. (2014)
Matricaria chamomilla, Calendula officinal, Solanum distichum Bacillus sp. Koeberl et al. (2013)
Rumex patientia Proteobacterium Bacteroidetes, Acidobacteria, Gemmatimonadetes, Verrucomicrobia, Planctomycetes, Actinobacteria, Firmicutes, Chloroflexi Qi et al. (2012)
Atractylodes lancea Gram-negative bacteria Dai et al. (2013)
Origanum vulgare Pseudomonas, Stenotrophomonas Bafana (2013)
Typhonium giganteum Kribbella flavida, Kribbella karoonensis, Kribbella alba Xu et al. (2012)
Ginseng plants Actinomycetes Zhang et al. (2013)
Ajuga bracteosa Pseudomonas Kumar et al. (2012)
Nerium indicum Pontibacter Kumar et al. (2012)
Nerium indicum Pontibacter Raichand et al. (2011)
Fritillaria thunbergii Proteobacteria Acidobacteria Actinobacteria Bacteroidetes Shi et al. (2011)
Astragalus membranaceus Geodermatophilus obscurus Zhang et al. (2011)
Phytolacca acinose Aspergillus fumigatus Guo et al. (2010)
Agathosma betulina Cryptococcus laurentii Cloete et al. (2010)
Ocimum sanctum, Coleus forskohlii, Catharanthus roseus, Aloe vera Azospirillum, Azotobacter, Pseudomonas Karthikeyan et al. (2008)
Annona squamosa, Eclipta alba, Cassia auriculata Bacillus, Pseudomonas, Enterobacter, Corynebacterium, Micrococcus, Serratia Tamilarasi et al. (2008)
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