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Adam, H., Collin, M., Richaud, F., Beulé, T., Cros, D., et al. (2011) Environmental regulation of sex determination in oil palm: current knowledge and insights from other species. Annals of Botany 108, 1529–1537.

Adam, H., Jouannic, S., Escoute, J., Duval, Y., Verdeil, J.L. and Tregear, J.W. (2005) Reproductive developmental complexity in the African oil palm (Elaeis guineensis). American Journal of Botany 92, 1836–1852.

Adam, H., Jouannic, S., Morcillo, F., Richaud, F., Duval, Y. and Tregear, J.W. (2006) MADS box genes in oil palm (Elaeis guineensis): patterns in the evolution of the SQUAMOSA, DEFICIENS, GLOBOSA, AGAMOUS, and SEPALLATA subfamilies. Journal of Molecular Evolution 62, 15–31.

Adam, H., Jouannic, S., Orieux, Y., Morcillo, F., Richaud, F., et al. (2007) Functional characterization of MADS box genes involved in the determination of oil palm flower structure. Journal of Experimental Botany 58, 1245–1259.

Bai, B., Wang, L., Zhang, Y.J., Lee, M., Rahmadsyah, R., et al. (2018) Developing genome-wide SNPs and constructing an ultrahigh-density linkage map in oil palm. Scientific Reports 691, 1–7. doi:10.1038/s41598-017-18613-2

Barcelos, E., de Almeida Rios, S., Cunha, R., Lopes, R., Motoike, S.Y., et al. (2015) Oil palm natural diversity and the potential for yield improvement. Frontiers of Plant Science 6, Article 190. doi:10.3389/fpls.2015.00190

Beirnart, A. and Vanderweyen, T. (1941) Contribution à l’étude génétique et biométrique des variétés d’Elaeis guineensis Jacq. INEAC, Série Scientifique n°27.

Beulé, T., Agbessi, M.D.T., Dussert, S., Jaligot, E. and Guyot, R. (2015) Genome-wide analysis of LTR-retrotransposons in oil palm. BMC Genomics 16, 795.

Beulé, T., Camps, C., Debiesse, S., Tranchant, C., Dussert, S., et al. (2011) Transcriptome analysis reveals differentially expressed genes associated with the mantled homeotic flowering abnormality in oil palm (Elaeis guineensis). Tree Genetics and Genomes 7, 169–182.

Beulé, T., Ilbert, P., Adeoti, K., Durand-Gasselin, T., Dumet, D., et al. (2018) Recovery of oil palm (Elaeis guineensis Jacq.) somatic embryos cryostored for 20 years. CryoLetters 39, 60–66.

Billotte, N., Marseillac, N., Risterucci, A.M., Adon, B., Brottier, P., et al. (2005) Microsatellite-based high density linkage map in oil palm (Elaeis guineensis Jacq.). Theoretical and Applied Genetics 110, 754–765.

Bourgis, F., Kilaru, A., Cao, X., Ngando-Ebongue, G.F., Drira, N., et al. (2011) Comparative transcriptome and metabolite analysis of oil palm and date palm mesocarp that differ dramatically in carbon partitioning. Proceedings of the National Academy of Sciences of the United States of America 108 (30), 12527–12532. doi:10.1073/pnas.1106502108

Breton, F., Hasan, Y., Lubis, Z. and De Franqueville, H. (2006) Characterization of parameters for the development of an early screening test for basal stem rot tolerance in oil palm progenies. Journal of Oil Palm Research 0406, 24–36.

Chin, S., Louise, C., de Franqueville, H., Cooper, R.M., Nouy, B., et al. (2017) Objective traits. In: Soh, A.C., Mayes, S. and Roberts, J.A. (eds) Oil Palm Breeding. CRC Press, Boca Raton, Florida, pp. 85–142.

Cochard, B., Amblard, P. and Durand-Gasselin, T. (2005) Oil palm genetic improvement and sustainable development. OCL: Oilseeds and Fats, Crops and Lipids12 (2), 141–147. doi:10.1051/ocl.2005.0141

Corley, R.H.V. and Tinker, P.B. (2016) The Oil Palm, 5th edn. Wiley, Chichester, UK.

Cros, D., Bocs, S., Riou, V., Ortega-Abboud, E., Tisné, S., et al. (2017) Genomic preselection with genotyping-by-sequencing increases performance of commercial oil palm hybrid crosses. BMC Genomics 18, 839. doi:10.1186/s12864-017-4179-3

Cruden, R.W. (1988) Temporal dioecism: systematic breadth, associated traits, and temporal patterns. Botanical Gazette 149, 1–15.

Dumet, D., Engelmann, F., Chabrillange, N. and Duval, Y. (1993) Cryopreservation of oil palm (Elaeis guineensis Jacq.) somatic embryos involving a desiccation step. Plant Cell Reports 12, 352–355.

Dunwell, J.M., Wilkinson, M.J., Nelson, S., Wening, S., Sitorus, A.C., et al. (2010) Production of haploids and doubled haploids in oil palm. BMC Plant Biology 10, 218. Available at: https://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-2229-10-218 (accessed 8 November 2019).

Durand-Gasselin, T., Asmady, H., Flori, A., Jacquemard, J.C., Hayun, Z., et al. (2005) Possible sources of genetic resistance in oil palm (Elaeis guineensis Jacq.) to basal stem rot caused by Ganoderma boninense – prospects for future breeding. Mycopathologia 159, 93–100.

Dussert, S., Guerin, C., Andersson, M., Joët, T., Tranbarger, T.J., et al. (2013) Comparative transcriptome analysis of three oil palm fruit and seed tissues that differ in oil content and fatty acid composition. Plant Physiology 162, 1337–1358.

Forster, B.P., Sitepu, B., Setiawati, U., Kelanaputra, E.S., Nur, F., et al. (2017) Oil palm (Elaeis guineensis). In: Campos, H. and Caligari, P.D.S. (eds) Genetic Improvement of Tropical Crops. Springer, Cham, Switzerland. doi:10.1007/978-3-319-59819-2_8

Gallusci, P., Dai, Z., Génard, M., Gauffretau, A., Leblanc-Fournier, N., et al. (2017) Epigenetics for plant improvement: current knowledge and modeling avenues. Trends in Plant Science 22, 610–623.

Gan, S.T., Wong, W.C., Wong, C.K., Soh, A.K., Kilian, A., et al. (2018) High density SNP and DArT-based genetic linkage maps of two closely related oil palm populations. Journal of Applied Genetics 59, 23. doi:10.1007/s13353-017-0420-7

Guerin, C., Joet, T., Serret, J., Lashermes, P., Vaissayre, V., et al. (2016) Gene coexpression network analysis of oil biosynthesis in an interspecific backcross of oil palm. The Plant Journal 87, 423–441.

Henderson, W.J. (2005) Induction of androgenesis in oil palm (Elaeis guineensis Jacq.). PhD thesis, The University of Queensland, Brisbane, Australia. Available at: https://espace.library.uq.edu.au/view/UQ:107247 (accessed 18 November 2019).

Iswandar, H.E., Dunwell, J.M., Forster, B.P., Nelson, S.P.C. and Caligari, P.D.S. (2010) Doubled haploid ramets via embryogenesis of haploid tissue cultures. In: Proceeding on Advances in Oil Palm Tissue Culture, Yogyakarta, Indonesia, pp. 100–104. Available at: http://centaur.reading.ac.uk/20549/ (accessed 18 November 2019).

Ithnin, M., Serdari, N.M., Abdullah, N., Kushairi, A. and Singh, R. (2017) Biodiversity and conservation of Elaeis species. In: Ahuja, M. and Jain, S. (eds) Biodiversity and Conservation of Woody Plants. Sustainable Development and Biodiversity, Vol. 17. Springer, Cham, Switzerland. doi:10.1007/978-3-319-66426-2_9

Izawati, A.M.D., Parveez, G.K.A. and Masani, M.Y.A. (2012) Transformation of oil palm using Agrobacterium tumefaciens. In: Dunwell, J.M. and WettenA.C. (eds) Transgenic Plants. Humana Press, New York, pp. 177–188.

Jain, M., Olsen, H.E., Turner, D.J., Stoddart, D., Bulazel, K.V., et al. (2018) Linear assembly of a human centromere on the Y chromosome. Nature Biotechnology 36, 321–323. doi:10.1038/nbt.4109

Jaligot, E., Adler, S., Debladis, E., Beulé, T., Richaud, F., et al. (2011) Epigenetic imbalance and the floral developmental abnormality of oil palm. Annals of Botany 108, 1453–1462.

Jaligot, E., Hooi, W.Y., Debladis, E., Richaud, F., Beulé, T., et al. (2014) DNA methylation and transcriptional activity of the EgDEF1 gene and neighboring retrotransposons in mantled somaclonal variants of oil palm. PLOS ONE 9, e91896.

Jaligot, E. and Rival, A. (2015) Epigenetic variations: a trade-off between genome stability and phenotypic plasticity. In: Al-Khayri, J.M., Jain, S.M. and Johnson, D.V. (eds) Advances in Plant Breeding Strategies: Breeding, Biotechnology and Molecular Tools. Springer, Cham, Switzerland. doi:10.1007/978-3-319-22521-0_6

Jin, J., Sun, Y., Qu, J., Lim, C.H., Alfiko, Y., et al. (2017) Transcriptome and functional analysis reveals hybrid vigor for oil biosynthesis in oil palm. Scientific Reports 7, 439. doi:10.1038/s41598-017-00438-8

Konan, K.E., Durand-Gasselin, T., Kouadio, Y.J., Flori, A. and Rival, A. (2006) A modeling approach of the in vitro conversion of oil palm (Elaeis guineensis Jacq.) somatic embryos. Plant Cell, Tissue and Organ Culture 84, 99–112.

Konan, K.E., Durand-Gasselin, T., Kouadio, Y.J., Flori, A., Rival, A., et al. (2010) in vitro conservation of oil palm somatic embryos for 20 years on a hormone-free culture medium: characteristics of the embryogenic cultures, derived plantlets and adult palms. Plant Cell Reports 29, 1–13.

Konan, K.E., Durand-Gasselin, T., Kouadio, Y.J., Niamke, A.C., Dumet, D., et al. (2007b) Field development of oil palms (Elaeis guineensis Jacq.) originating from cryopreserved stabilized polyembryonic cultures (SPCs). CryoLetters 28, 377–386.

Konan, K.E., Kouadio, J.Y., Flori, A., Durand-Gasselin, T. and Rival, A. (2007a) Evidence for an interaction effect during in vitro rooting of oil palm (Elaeis guineensis Jacq.) somatic embryo-derived plantlets. In Vitro Cellular & Developmental Biology – Plant 43, 456–466.

Krutkaew, V., Srirat, T., Tragoonrung, S., Vanavichit, A. and Jantasuriyarat, C. (2013) Cloning and characterization of stearoyl–ACP desaturase gene (SAD) in oil palm (Elaeis guineensis Jacq.). Genomics and Genetics 6, 59–63.

Kwong, Q.B., Teh, C.K., Ong, A.L., Chew, F.T., Mayes, S., et al. (2017) Evaluation of methods and marker systems in genomic selection of oil palm (Elaeis guineensis Jacq.). BMC Genetics 18, 107. doi:10.1186/s12863-017-0576-5

Lee, M., Xia, J.H., Zou, Z., Ye, J., Alfiko, Y., et al. (2015) A consensus linkage map of oil palm and a major QTL for stem height. Scientific Reports 5, 8232. doi:10.1038/srep08232

Lin, H.C., Morcillo, F., Dussert, S., Tranchant-Dubreuil, C., Tregear, J.W. and Tranbarger, T.J. (2009) Transcriptome analysis during somatic embryogenesis of the tropical monocot Elaeis guineensis: evidence for conserved gene functions in early development. Plant Molecular Biology 70, 173–192.

Low, E.T.L., Alias, H., Boon, S.H., Shariff, E.M., Tan, C.Y.A., et al. (2008) Oil palm (Elaeis guineensis Jacq.) tissue culture ESTs: identifying genes associated with callogenesis and embryogenesis. BMC Plant Biology 8, 62. doi:10.1186/1471-2229-8-62

Ma, W., Kong, Q., Arondel, V., Kilaru, A., Bates, P.D., et al. (2013) Wrinkled1, a ubiquitous regulator in oil accumulating tissues from Arabidopsis embryos to oil palm mesocarp. PLOS ONE 8, e68887.

Madon, M., Clyde, M.M. and Cheah, S.C. (1998) Cytological analysis of Elaeis guineensis and Elaeis oleifera chromosomes. Journal of Oil Palm Research 10, 68–91.

Masani, M.Y.A., Noll, G., Parveez, G.K.A., Sambanthamurthi, R. and Prüfer, D. (2013) Regeneration of viable oil palm plants from protoplasts by optimizing media components, growth regulators and cultivation procedures. Plant Science 210, 118–127.

Masani, M.Y.A., Noll, G.A., Parveez, G.K.A., Sambanthamurthi, R. and Prüfer, D. (2014) Efficient transformation of oil palm protoplasts by PEG-mediated transfection and DNA microinjection. PLOS ONE 9, e96831.

Mayes, S., Jack, P.L. and Corley, R.H.V. (2000) The use of molecular markers to investigate the genetic structure of an oil palm breeding programme. Heredity 85, 288–293.

Mercière, M., Laybats, A., Carasco-Lacombe, C., Tan, J.S., Klopp, C., et al. (2015) Identification and development of new polymorphic microsatellite markers using genome assembly for Ganoderma boninense, causal agent of oil palm basal stem rot disease. Mycological Progress 14 (11), 103.

Montoya, C., Lopes, R., Flori, A., Cros, D., Cuellar, T., et al. (2013) Quantitative trait loci (QTLs) analysis of palm oil fatty acid composition in an interspecific pseudo-backcross from Elaeis oleifera (HBK) Cortés and oil palm (Elaeis guineensis Jacq.). Tree Genetics and Genomes 9, 1207–1225.

Morcillo, F., Cros, D., Billotte, N., Ngando-Ebongue, G.F., Domonhédo, H., et al. (2013) Improving palm oil quality through identification and mapping of the lipase gene causing oil deterioration. Nature Communications 4, 2160. doi:10.1038/ncomms3160

Morcillo, F., Gallard, A., Pillot, M., Jouannic, S., Aberlenc-Bertossi, F., et al. (2007) EgAP2-1, an AINTEGUMENTA-like (AIL) gene expressed in meristematic and proliferating tissues of embryos in oil palm. Planta 226, 1353–1362.

Murashige, T. and Skoog, F. (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiologia Plantarum 15 (3), 473–497.

Murphy, D.J. (2009) Oil palm: future prospects for yield and quality improvements. Lipid Technology 21, 257–260.

Ollivier, J., Flori, A., Cochard, B., Amblard, P., Turnbull, N., et al. (2016) Genetic variation in nutrient uptake and nutrient use efficiency of oil palm. Journal of Plant Nutrition 40, 558–573. doi:10.1080/01904167.2016.1262415

Ong-Abdullah, M., Ordway, J.M., Jiang, N., Ooi, S.-E., Kok, S.-Y., et al. (2015) Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm. Nature 525, 533–537. doi:10.1038/nature15365

Parveez, G.K.A. (2008) Biolistic mediated production of transgenic oil palm. In: Armstrong, D. (ed.) Advanced Protocols in Oxidative Stress I. Humana Press, New York, pp. 301–320.

Parveez, G.K.A. and Bahariah, B. (2012) Biolistic-mediated production of transgenic oil palm. In: Dunwell, J.M. and Wetten, A.C. (eds) Transgenic Plants. Humana Press, New York, pp. 163–175.

Parveez, G.K.A., Rasid, O.A., Masani, M.Y.A. and Sambanthamurthi, R. (2015) Biotechnology of oil palm: strategies towards manipulation of lipid content and composition. Plant Cell Reports 34, 533–543.

Paterson, R.R.M., Sariah, M. and Lima, N. (2013) How will climate change affect oil palm fungal diseases?Crop Protection 46, 113–120. doi:10.1016/j.cropro.2012.12.023

Pootakham, W., Jomchai, N., Ruang-areerate, P., Shearman, J.R., Sonthirod, C., et al. (2015) Genome-wide SNP discovery and identification of QTL associated with agronomic traits in oil palm using genotyping-by-sequencing (GBS). Genomics 105, 288–295. doi:10.1016/j.ygeno.2015.02.002

Rival, A. (2007) The oil palm. In: Pua, E.C. and Davey, M.R. (eds) Biotechnology in Agriculture and Forestry, Vol.61 : Transgenic Crops VI. Springer, Berlin, pp. 59–80.

Rival, A. (2013) The oil palm: challenges and questions to research. OCL: Oilseeds and Fats, Crops and Lipids 20 (3), 133–142. doi:10.1684/ocl.2013.0506

Rival, A. (2017) Breeding the oil palm (Elaeis guineensis Jacq.) for climate change. OCL: Oilseeds and Fats, Crops and Lipids 24, D107, 7 p.

Rival, A., Beulé, T., Barre, P., Hamon, S., Duval, Y. and Noirot, M. (1997) Comparative flow cytometric estimation of nuclear DNA content in oil palm (Elaeis guineensis Jacq.) tissue cultures and seed-derived plants. Plant Cell Reports 16, 884–887.

Rival, A. and Durand-Gasselin, T. (2013) Phenotype and genotype: exploring the breeder’s black box. Palmas 34, 161–167.

Rival, A., Ilbert, P., Labeyrie, A., Torres, E., Doulbeau, S., et al. (2013) Variations in genomic DNA methylation during the long-term in vitro proliferation of oil palm embryogenic suspension cultures. Plant Cell Reports 32, 359–368. doi:10.1007/s00299-012-1369-y

Rival, A. and Jaligot, E. (2010) Oil palm biotechnologies are definitely out of infancy. OCL: Oilseeds and Fats, Crops and Lipids 17, 368–374.

Rival, A. and Jaligot, E. (2011) Epigenetics and plant breeding. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 6, 048.

Rival, A., Jaligot, E., Beulé, T. and Finnegan, J. (2008) Isolation and differential expression of MET, CMT and DRM methyltransferase genes from oil palm (Elaeis guineensis Jacq.) in relation with the ‘mantled’ somaclonal variation. Journal of Experimental Botany 59, 3271–3281.

Rival, A. and Levang, P. (2014) Palms of Controversy: Oil Palm and Development Challenges. CIFOR, Bogor, Indonesia. ISBN:978-602-1504-41-3.

Roongsattham, P., Morcillo, F., Jantasuriyarat, C., Pizot, M., Moussu, S., et al. (2012) Temporal and spatial expression of polygalacturonase gene family members reveals divergent regulation during fleshy fruit ripening and abscission in the monocot species oil palm. BMC Plant Biology 12, 150. doi:10.1186/1471-2229-12-150

Seymour, D.K. and Becker, C. (2017) The causes and consequences of DNA methylome variation in plants. Current Opinion in Plant Biology 36, 56–63.

Shearman, J.R., Jantasuriyarat, C., Sangsrakru, D., Yoocha, T., Vannavichit, A., et al. (2013) Transcriptome analysis of normal and mantled developing oil palm flower and fruit. Genomics 101, 306–312.

Singh, R., Low, E.T.L., Ooi, L.C.L., Ong-Abdullah, M., Chin, T.N., et al. (2013a) The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK. Nature 500, 340–344

Singh, R., Ong-Abdullah, M., Low, E.T., Manaf, M.A., Rosli, R., et al. (2013b) Oil palm genome sequence reveals divergence of interfertile species in old and new worlds. Nature 500, 335–339.

Smulders, M.J.M. and De Klerk, G.J. (2011) Epigenetics in plant tissue culture. Plant Growth Regulation 63, 137–146.

Sodano, V., Riverso, R. and Scafuto, F. (2018) Investigating the intention to reduce palm oil consumption. Calitatea 19 (S1), 500–505.

Soh, A.C., Mayes, S. and Roberts, J.A. (eds) (2017) Oil Palm Breeding: Genetics and Genomics. CRC Press, Boca Raton, Florida, 464 pp. ISBN:9781498715454.

Somyong, S., Poopear, S., Jomchai, N., Uthaipaisanwong, P., Ruang-areerateP., et al. (2015) The AKR gene family and modifying sex ratios in palms through abiotic stress responsiveness. Functional & Integrative Genomics 15, 349–362. doi:10.1007/s10142-014-0423-y

Steinmacher, D.A., Guerra, M.P., Saare-Surminski, K. and Lieberei, R. (2011) A temporary immersion system improves in vitro regeneration of peach palm through secondary somatic embryogenesis. Annals of Botany 108, 1463–1475.

Tee, S.S., Tan, Y.C., Abdullah, F., Ong-Abdullah, M. and Ho, C.L. (2013) Transcriptome of oil palm (Elaeis guineensis Jacq.) roots treated with Ganoderma boninense. Tree Genetics and Genomes 9, 377–386.

Teh, C.-K., Ong, A.-L., Kwong, Q.-B., Apparow, S., Chew, F.-T., et al. (2016) Genome-wide association study identifies three key loci for high mesocarp oil content in perennial crop oil palm. Scientific Reports 6, 19075. doi:10.1038/srep19075

Teh, H.F., Neoh, B.K., Ithnin, N., Daim, L.D.J., Ooi, T.E.K. and Appleton, D.R. (2017) Review: omics and strategic yield improvement in oil crops. Journal of the American Oil Chemists’ Society 94, 1225–1244. doi:10.1007/s11746-017-3033-8

Ting, N.-C. (2014) High density SNP and SSR-based genetic maps of two independent oil palm hybrids. BMC Genomics 15, 309. Available at: https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-309 (accessed 8 November 2019).

Tisné, S., Pomiès, V., Riou, V., Syahputra, I., Cochard, B. and Denis, M. (2017) Identification of Ganoderma disease resistance loci using natural field infection of an oil palm multiparental population. G3:Genes, Genomes, Genetics 7, 1683–1692.

Tittonell, P. (2014) Ecological intensification of agriculture – sustainable by nature. Current Opinion in Environmental Sustainability 8, 53–61. doi:10.1016/j.cosust.2014.08.006

Tranbarger, T.J., Dussert, S., Joët, T., Argout, X., Summo, M., et al. (2011) Regulatory mechanisms underlying oil palm fruit mesocarp maturation, ripening, and functional specialization in lipid and carotenoid metabolism. Plant Physiology 156, 564–584.

Tranbarger, T.J., Fooyontphanich, K., Roongsattham, P., Pizot, M., Collin, M., et al. (2017) Transcriptome analysis of cell wall and NAC domain transcription factor genes during Elaeis guineensis fruit ripening: evidence for widespread conservation within monocot and eudicot lineages. Frontiers in Plant Science 8, 603. doi:10.3389/fpls.2017.00603

Tranbarger, T.J., Kluabmongkol, W., Sangsrakru, D., Morcillo, F., Tregear, W.J., et al. (2012) SSR markers in transcripts of genes linked to post-transcriptional and transcriptional regulatory functions during vegetative and reproductive development of Elaeis guineensis. BMC Plant Biology 12, 1. Available at: https://bmcplantbiol.biomedcentral.com/articles/10.1186/1471-2229-12-1 (accessed 8 November 2019).

Tregear, J.W., Rival, A. and Pintaud, J.-C. (2011) A family portrait: unravelling the complexities of palms. Annals of Botany 108, 1387–1389.

Uthaipaisanwong, P., Chanprasert, J., Shearman, J.R., Sangsrakru, D., Yoocha, T., et al. (2012) Characterization of the chloroplast genome sequence of oil palm (Elaeis guineensis Jacq.). Gene 500, 172–180.

Woittiez, L.S., van Wijk, M.T., Slingerland, M., van Noordwijk, M. and Giller, K.E. (2017) Yield gaps in oil palm: a quantitative review of contributing factors. European Journal of Agronomy 83, 57–77.

Wong, C.K. and Bernardo, R. (2008) Genome wide selection in oil palm: increasing selection gain per unit time and cost with small populations. Theoretical and Applied Genetics 116 (6), 815–824.

Yenchon, S. and Te-chato, S. (2012) Effect of bacteria density, inoculation and co-cultivation period on Agrobacterium-mediated transformation of oil palm embryogenic callus. Journal of Agricultural Technology 8, 1485–1496.

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