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Paul A. Gagniuc
Algorithms in Bioinformatics
Читать книгу Algorithms in Bioinformatics - Paul A. Gagniuc - Страница 1
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Страница 1
Table of Contents
List of Tables
List of Illustrations
Guide
Pages
Algorithms in Bioinformatics Theory and Implementation
Страница 8
Страница 9
Preface
About the Companion Website
1 The Tree of Life (I) 1.1 Introduction
1.2 Emergence of Life
1.2.1 Timeline Disagreements
1.3 Classifications and Mechanisms
1.4 Chromatin Structure
1.5 Molecular Mechanisms
1.5.1 Precursor Messenger RNA
1.5.2 Precursor Messenger RNA to Messenger RNA
1.5.3 Classes of Introns
1.5.4 Messenger RNA
1.5.5 mRNA to Proteins
1.5.6 Transfer RNA
1.5.7 Small RNA
1.5.8 The Transcriptome
1.5.9 Gene Networks and Information Processing
1.5.10 Eukaryotic vs. Prokaryotic Regulation
1.5.11 What Is Life?
1.6 Known Species
1.7 Approaches for Compartmentalization
1.7.1 Two Main Approaches for Organism Formation
1.7.2 Size and Metabolism
1.8 Sizes in Eukaryotes
1.8.1 Sizes in Unicellular Eukaryotes
1.8.2 Sizes in Multicellular Eukaryotes
1.9 Sizes in Prokaryotes
1.10 Virus Sizes
1.10.1 Viruses vs. the Spark of Metabolism
1.11 The Diffusion Coefficient
1.12 The Origins of Eukaryotic Cells
1.12.1 Endosymbiosis Theory
1.12.2 DNA and Organelles
1.12.3 Membrane-bound Organelles with DNA
1.12.4 Membrane-bound Organelles Without DNA
1.12.5 Control and Division of Organelles
1.12.6 The Horizontal Gene Transfer
1.12.7 On the Mechanisms of Horizontal Gene Transfer
1.13 Origins of Eukaryotic Multicellularity
1.13.1 Colonies Inside an Early Unicellular Common Ancestor
1.13.2 Colonies of Early Unicellular Common Ancestors
1.13.3 Colonies of Inseparable Early Unicellular Common Ancestors
1.13.4 Chimerism and Mosaicism
1.14 Conclusions
2 Tree of Life: Genomes (II) 2.1 Introduction
2.2 Rules of Engagement
2.3 Genome Sizes in the Tree of Life
2.3.1 Alternative Methods
2.3.2 The Weaving of Scales
Additional algorithm 2.1
Note that the source code is in context and works with copy/paste.
Additional algorithm 2.2
Note that the source code is in context and works with copy/paste.
2.3.3 Computations on the Average Genome Size
2.3.4 Observations on Data
2.4 Organellar Genomes
2.4.1 Chloroplasts
2.4.2 Apicoplasts
2.4.3 Chromatophores
2.4.4 Cyanelles
2.4.5 Kinetoplasts
2.4.6 Mitochondria
2.5 Plasmids
2.6 Virus Genomes
2.7 Viroids and Their Implications
2.8 Genes vs. Proteins in the Tree of Life
2.9 Conclusions
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