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GyrA inhibition

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Nalidixic acid specifically binds to the GyrA subunit, which is involved in cutting the DNA and in strand passage. This activity makes nalidixic acid and its many derivatives, including oxolinic acid and chloromycetin, very useful antibiotics. Another antibiotic that binds to the GyrA subunit, ciprofloxacin, is used for treating gonorrhea, anthrax, and bacterial dysentery. However, because these antibiotics can induce prophages, they may actually make some diseases worse (see chapter 7).

The mechanism of killing by these antibiotics is not completely understood. They are known to cause degradation of DNA and can cause the DNA to become covalently linked to gyrase, presumably by trapping it in an intermediate state in the process of strand passage. Bacteria resistant to nalidixic acid have an altered gyrA gene.

Snyder and Champness Molecular Genetics of Bacteria

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