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1.2.1.1 DNA Polymerases

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DNA polymerases is the key enzyme in DNA replication driving the synthesis of new DNA strand from the parent DNA or RNA strand acting as a template. DNA polymerases require an oligo nucleotide (primer) for the initiation of DNA strand synthesis. DNA polymerase‐I (DNA‐dependent DNA polymerase) is widely studied polymerase and has both polymerization and exonuclease activity that can help in synthesizing new strand as well as the degradation for proof reading or repair and primer removal. DNA polymerase I (or Pol I) takes part in the process of prokaryotic DNA replication. It was the first DNA polymerase discovered by Arthur Kornberg in 1956 (Lehman et al., 1958). Pol I has three different enzymatic activities: A 5′ →3′ DNA‐dependent DNA polymerase activity, a 3′ →5′ exonuclease activity that helps in proofreading, and a 5′ → 3′ exonuclease activity mediating nick translation during DNA repair. Pol I having polymerase but lacking nuclease activity is called klenow fragments (Klenow and Henningsen, 1970; Jacobsen et al., 1974).

Taq DNA polymerase, a thermostable DNA polymerase isolated from Thermus aquaticus by Chien et al. (1976). It is frequently used in the polymerase chain reaction (PCR), to amplify small quantities of DNA. It has a functional 5′ → 3′ exonuclease domain at the N‐terminal, and 3′–5′ exonuclease domain was changed so it is not functional. Optimum temperature for Taq pol activity is 75–80 °C, with a half‐life of greater than 2 hours at 92.5 °C and minimum 9 minutes at 97.5 °C, and able to replicate a 1000 bp strand of DNA within 10 seconds at 72 °C.

Biomolecular Engineering Solutions for Renewable Specialty Chemicals

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