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2.3.1 Microbial Population in the Endosphere

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Numerous studies have already characterized endophytes from a plethora of plant hosts and different plant compartments above and below the ground. Endophytes are present ubiquitously in most of the plant, either actively or latently colonizing the plant tissue. Generally, the plant endosphere is enriched with members of Proteobacteria [48] and to a lesser amount with Actinobacteria, Firmicutes, and Bacteroidetes [49]. Other classes that are less commonly found include Acidobacteria, Chloroflexi, Verrucomicrobia, and Planctomycetes [48]. Endophytic genera of bacteria commonly found to belong to Microbacterium, Burkholderia, Micrococcus, Bacillus, Pseudomonas, and Pantoea, where Bacillus and Pseudomonas spp. dominate [50]. Fungal endophytes commonly found belong to Ascomycota, and a few belong to Basidiomycota, Zygomycota, and Oomycota. Common genera that are reported are Trichoderma, Fusarium, and Aureobasidium [51]. However, the dominance of the phyla varies depending on the plant host species.

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