Читать книгу Core Microbiome - Группа авторов - Страница 41

1 1 Kumar, V., Prasad, R., Kumar, M., and Choudhary, D.K., (eds). (2019). Microbiome in Plant Health and Disease: Challenges and Opportunities. Springer. Aug 10.

2 2 Hammonds, K., Trivedi, P., Garg, A., Janitz, C., Grinyer, J., Holford, P., Botha, F.C., Anderson, I.C., and Singh, B.K. (2018). Field study reveals core plant microbiota and the relative importance of their drivers. Environmental Microbiology Jan 20 (1): 124–140.

3 3 Mendes, R., Garbeva, P., and Raaijmakers, J.M. (2013). The rhizosphere microbiome: Significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms. FEMS Microbiology Reviews Sep 1 37 (5): 634–663.

4 4 Tkacz, A. and Poole, P. (2015). Role of root microbiota in plant productivity. Journal of Experimental Botany Apr 1 66 (8): 2167–2175.

5 5 Baetz, U. and Martinoia, E. (2014). Root exudates: The hidden part of plant defense. Trends in Plant Science Feb 1 19 (2): 90–98.

6 6 Hu, L., Robert, C.A., Cadot, S., Zhang, X., Ye, M., Li, B., Manzo, D., Chervet, N., Steinger, T., Van Der Heijden, M.G., and Schlaeppi, K. (2018). Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota. Nature Communications Jul 16 9 (1): 1–3.

7 7 Tkacz, A. and Poole, P. (2021). The plant microbiome: The dark and dirty secrets of plant growth. Plants, People, Planet Mar 3 (2): 124–129.

8 8 Parniske, M. (2008). Arbuscular mycorrhiza: The mother of plant root endosymbioses. Nature Reviews Microbiology Oct 6 (10): 763–775.

9 9 Claesson, M.J., Wang, Q., O’Sullivan, O., Greene-Diniz, R., Cole, J.R., Ross, R.P., and O’Toole, P.W. (2010). Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions. Nucleic Acids Research Dec 1 38 (22): e200.

10 10 Schoch, C.L., Seifert, K.A., Huhndorf, S., Robert, V., Spouge, J.L., Levesque, C.A., and Chen, W. (2012). Fungal Barcoding Consortium. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences Apr 17 109 (16): 6241–6246.

11 11 Sessitsch, A., Hardoim, P., Döring, J., Weilharter, A., Krause, A., Woyke, T., Mitter, B., Hauberg-Lotte, L., Friedrich, F., Rahalkar, M., and Hurek, T. (2012). Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis. Molecular Plant–Microbe Interactions Jan 25 (1): 28–36.

12 12 Wang, X., Wang, M., Xie, X., Guo, S., Zhou, Y., Zhang, X., Yu, N., and Wang, E. (2020). An amplification-selection model for quantified rhizosphere microbiota assembly. Science Bulletin Mar 7 65 (12): 983–986.

13 13 Prashar, P., Kapoor, N., and Sachdeva, S. (2014). Rhizosphere: Its structure, bacterial diversity and significance. Reviews in Environmental Science and Bio/Technology Mar 13 (1): 63–77.

14 14 Garbeva, P.V., Van Veen, J.A., and Van Elsas, J.D. (2004). Microbial diversity in soil: Selection of microbial populations by plant and soil type and implications for disease suppressiveness. Annual Review of Phytopathology Sep 8 42: 243–270.

15 15 Schreiter, S., Babin, D., Smalla, K., and Grosch, R. (2018). Rhizosphere competence and biocontrol effect of Pseudomonas sp. RU47 Independent from Plant Species and Soil Type at the Field Scale. Frontiers in Microbiology Feb 1 9: 97.

16 16 Robin, A., Mazurier, S., Mougel, C., Vansuyt, G., Corberand, T., Meyer, J.M., and Lemanceau, P. (2007). Diversity of root-associated fluorescent Pseudomonads as affected by ferritin overexpression in tobacco. Environmental Microbiology Jul 9 (7): 1724–1737.

17 17 Di Pietro, A., Lorito, M., Hayes, C.K., Broadway, R.M., and Harman, G.E. (1993). Endochitinase from Gliocladium virens: Isolation, characterization, and synergistic antifungal activity in combination with gliotoxin. Phytopathology.

18 18 Harman, G.E., Petzoldt, R., Comis, A., and Chen, J. (2004). Interactions between Trichoderma harzianum strain T22 and maize inbred line Mo17 and effects of these interactions on diseases caused by Pythium ultimum and Colletotrichum graminicola. Phytopathology Feb 94 (2): 147–153.

19 19 Amadou, M., Duponnois, R., and Marseille, T. (1999). Beneficial effects of Enterobacter cloacae and Pseudomonas mendocina for biocontrol of Meloidogyne incognita with the endospore-forming bacterium Pasteuria penetrans. Nematology Jan 1 1 (1): 95–101.

20 20 Haas, D. and Keel, C. (2003). Regulation of antibiotic production in root-colonizing Pseudomonas spp. and relevance for biological control of plant disease. Annual Review of Phytopathology Sep 41 (1): 117–153.

21 21 Tsuge, K., Akiyama, T., and Shoda, M. (2001). Cloning, sequencing, and characterization of the iturin A operon. Journal of Bacteriology Nov 1 183 (21): 6265–6273.

22 22 Steller, S., Vollenbroich, D., Leenders, F., Stein, T., Conrad, B., Hofemeister, J., Jacques, P., Thonart, P., and Vater, J. (1999). Structural and functional organization of the fengycin synthetase multienzyme system from Bacillus subtilis b213 and A1/3. Chemistry & Biology Jan 1 6 (1): 31–41.

23 23 Raaijmakers, J.M., Paulitz, T.C., Steinberg, C., Alabouvette, C., and Moënne-Loccoz, Y. (2009). The rhizosphere: A playground and battlefield for soilborne pathogens and beneficial microorganisms. Plant and Soil Aug 321 (1): 341–361.

24 24 Asaka, O. and Shoda, M. (1996). Biocontrol of Rhizoctonia solani damping-off of tomato with Bacillus subtilis RB14. Applied and Environmental Microbiology Nov 1 62 (11): 4081–4085.

25 25 Couillerot, O., Prigent-Combaret, C., Caballero-Mellado, J., and Moënne-Loccoz, Y. (2009). Pseudomonas fluorescens and closely-related fluorescent Pseudomonads as biocontrol agents of soilborne phytopathogens. Letters in Applied Microbiology May 48 (5): 505–512.

26 26 Guo, Q., Shi, M., Chen, L., Zhou, J., Zhang, L., Li, Y., Xue, Q., and Lai, H. (2020). The biocontrol agent Streptomyces pactum increases Pseudomonas koreensis populations in the rhizosphere by enhancing chemotaxis and biofilm formation. Soil Biology & Biochemistry May 1 144: 107755.

27 27 Rezzonico, F., Binder, C., Défago, G., and Moënne-Loccoz, Y. (2005). The type III secretion system of biocontrol Pseudomonas fluorescens KD targets the phytopathogenic Chromista Pythium ultimum and promotes cucumber protection. Molecular Plant–Microbe Interactions Sep 18 (9): 991–1001.

28 28 Vacheron, J., Moënne-Loccoz, Y., Dubost, A., Gonçalves-Martins, M., Müller, D., and Fluorescent, P.-C.-C. (2016). Pseudomonas strains with only few plant-beneficial properties are favored in the maize rhizosphere. Frontiers in Plant Science Aug 25 7: 1212.

29 29 Pieterse, C.M., Zamioudis, C., Berendsen, R.L., Weller, D.M., Van Wees, S.C., and Bakker, P.A. (2014). Induced systemic resistance by beneficial microbes. Annual Review of Phytopathology Aug 4 52.

30 30 Pascale, A., Proietti, S., Pantelides, I.S., and Stringlis, I.A. (2020). Modulation of the root microbiome by plant molecules: The basis for targeted disease suppression and plant growth promotion. Frontiers in Plant Science Jan 24 (10): 1741.

31 31 Harman, G.E., Björkman, T., Ondik, K., and Shoresh, M. (2008). Changing paradigms on the mode of action and uses of Trichoderma spp. for biocontrol. Outlooks on Pest Management Feb 1 19 (1): 24.

32 32 Weller, D.M., Raaijmakers, J.M., Gardener, B.B., and Thomashow, L.S. (2002). Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annual Review of Phytopathology Sep 40 (1): 309–348.

33 33 Kwak, M.J., Kong, H.G., Choi, K., Kwon, S.K., Song, J.Y., Lee, J., Lee, P.A., Choi, S.Y., Seo, M., Lee, H.J., and Jung, E.J. (2018). Author correction: Rhizosphere microbiome structure alters to enable wilt resistance in tomato (Nat. Biotechnology 36 (11): (1100–1116). 10.1038/nbt. 4232). Nature Biotechnology 2018 Nov 9 36 (11): 1117.

34 34 Shi, W., Li, M., Wei, G., Tian, R., Li, C., Wang, B., Lin, R., Shi, C., Chi, X., Zhou, B., and Gao, Z. (2019). The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome. Microbiome Dec 7 (1): 1–8.

35 35 Minuto, A., Spadaro, D., Garibaldi, A., and Gullino, M.L. (2006). Control of soilborne pathogens of tomato using a commercial formulation of Streptomyces griseoviridis and solarization. Crop Protection May 1 25 (5): 468–475.

36 36 Sindhu, S.S., Rakshiya, Y.S., and Sahu, G. (2009). Biological control of soilborne plant pathogens with rhizosphere bacteria. Pest Technology 3 (1): 10–21.

37 37 Palmieri, D., Vitullo, D., De Curtis, F., and Lima, G. (2017). A microbial consortium in the rhizosphere as a new biocontrol approach against fusarium decline of chickpea. Plant and Soil Mar 1 412 (1-2): 425–439.

38 38 Wu, H., Lin, M., Rensing, C., Qin, X., Zhang, S., Chen, J., Wu, L., Zhao, Y., Lin, S., and Lin, W. (2020). Plant-mediated rhizospheric interactions in intraspecific intercropping alleviate the replanting disease of Radix pseudostellariae. Plant and Soil Sep 454 (1): 411–430.

39 39 Li, X., De Boer, W., Ding, C., Zhang, T., and Wang, X. (2018). Suppression of soilborne Fusarium pathogens of peanut by intercropping with the medicinal herb Atractylodes lancea. Soil Biology & Biochemistry Jan 1 116: 120–130.

40 40 Ren, L., Su, S., Yang, X., Xu, Y., Huang, Q., and Shen, Q. (2008). Intercropping with aerobic rice suppressed Fusarium wilt in watermelon. Soil Biology & Biochemistry Mar 1 40 (3): 834–844.

41 41 Zhang, H., Yang, Y., Mei, X., Li, Y., Wu, J., Li, Y., Wang, H., Huang, H., Yang, M., He, X., and Zhu, S. (2020). Phenolic acids released in maize rhizosphere during maize-soybean intercropping inhibit Phytophthora blight of soybean. Frontiers in Plant Science Jul 28 (11): 886.

42 42 Bailey, K.L. and Lazarovits, G. (2003). Suppressing soilborne diseases with residue management and organic amendments. Soil and Tillage Research Aug 1 72 (2): 169–180.

43 43 Pane, C., Spadaccini, R., Piccolo, A., Scala, F., and Bonanomi, G. (2011). Compost amendments enhance peat suppressiveness to Pythium ultimum, Rhizoctonia solani and Sclerotinia minor. Biological Control Feb 1 56 (2): 115–124.

44 44 Hardoim, P.R., van Overbeek, L.S., and van Elsas, J.D. (2008). Properties of bacterial endophytes and their proposed role in plant growth. Trends in Microbiology Oct 1 16 (10): 463–471.

45 45 Compant, S., Clément, C., and Sessitsch, A. (2010). Plant growth-promoting bacteria in the rhizo-and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization. Soil Biology & Biochemistry May 1 42 (5): 669–678.

46 46 Compant, S., Duffy, B., Nowak, J., Clément, C., and Barka, E.A. (2005). Use of plant growth-promoting bacteria for biocontrol of plant diseases: Principles, mechanisms of action, and future prospects. Applied and Environmental Microbiology Sep 1 71 (9): 4951–4959.

47 47 Sapers, G.M., Gorny, J.R., and Yousef, A.E., (editors). (2005). Microbiology of Fruits and Vegetables. CRC Press. Aug 29.

48 48 Santoyo, G., Moreno-Hagelsieb, G., del Carmen Orozco-mosqueda, M., and Glick, B.R. (2016). Plant growth-promoting bacterial endophytes. Microbiological Research Feb 1 183: 92–99.

49 49 Reinhold-Hurek, B. and Hurek, T. (2011). Living inside plants: Bacterial endophytes. Current Opinion in Plant Biology Aug 1 14 (4): 435–443.

50 50 Chaturvedi, H., Singh, V., and Gupta, G. (2016). Potential of bacterial endophytes as plant growth-promoting factors. Journal of Plant Pathology and Microbiology 7 (9): 1–6.

51 51 Anjum, R., Afzal, M., Baber, R., Khan, M.A., Kanwal, W., Sajid, W., and Raheel, A. (2019). Endophytes: As potential biocontrol agent—review and future prospects. The Journal of Agricultural Science 11: 113.

52 52 Sheoran, N., Nadakkakath, A.V., Munjal, V., Kundu, A., Venugopal, V., Rajamma, S., Eapen, S.J., and Kumar, A. (2015). Genetic analysis of plant endophytic Pseudomonas putida BP25 and chemo-profiling of its antimicrobial volatile organic compounds. Microbiological Research Apr 173: 66–78.

53 53 Sessitsch, A., Reiter, B., and Berg, G. (2004). Endophytic bacterial communities of field-grown potato plants and their plant-growth-promoting and antagonistic abilities. Canadian Journal of Microbiology May 50: 239–249.

54 54 Lodewyckx, C., Vangronsveld, J., Porteous, F., Moore, E.R.B., Taghavi, S., Mezgeay, M., and Lelie, D.V.D. (2002). Endophytic bacteria and their potential applications. Critical Reviews in Plant Sciences Nov 21 (6): 583–606.

55 55 Martinuz, A., Schouten, A., and Sikora, R.A. (2012). Systemically induced resistance and microbial competitive exclusion: Implications on biological control. Phytopathology Mar 102 (3): 260–266.

56 56 Rodriguez, R.J., White, J.F., Jr, Arnold, A.E., and Redman, A.R. (2009). Fungal endophytes: Diversity and functional roles. New Phytologist Apr 182 (2): 314–330.

57 57 Trover, M.F., Scavone, P., Platero, R., de Souza, E.M., Fabiano, E., and Rusconi, F. (2018). Herbaspirillum seropedicae differentially expressed genes in response to iron availability. Frontiers in Microbiology Jul 3 (9): 1430.

58 58 Zeng, J., Xu, T., Cao, L., Tong, C., Zhang, X., Luo, D., Han, S., Pang, P., Fu, W., Yan, J., and Liu, X. (2018). The role of iron competition in the antagonistic action of the rice endophyte Streptomyces sporocinereus OsiSh-2 against the pathogen Magnaporthe oryzae. Microbial Ecology Nov 76 (4): 1021–1029.

59 59 Mousa, W.K., Shearer, C., Limay-Rios, V., Ettinger, C.L., Eisen, J.A., and Raizada, M.N. (2016). Root-hair endophyte stacking in finger millet creates a physicochemical barrier to trap the fungal pathogen Fusarium graminearum. Nature Microbiology Sep 26 1 (12): 1–2.

60 60 Arnold, A.E., Mejía, L.C., Kyllo, D., Rojas, E.I., Maynard, Z., Robbins, N., and Herre, E.A. (2003). Fungal endophytes limit pathogen damage in a tropical tree. Proceedings of the National Academy of Sciences Dec 23 100 (26): 15649–15654.

61 61 Mousa, W.K. and Raizada, M.N. (2013). The diversity of antimicrobial secondary metabolites produced by fungal endophytes: An interdisciplinary perspective. Frontiers in Microbiology Mar 27 4: 65.

62 62 Kusari, S., Hertweck, C., and Spiteller, M. (2012). Chemical ecology of endophytic fungi: Origins of secondary metabolites. Chemistry & Biology Jul 27 19 (7): 792–798.

63 63 Silva, G.H., Teles, H.L., Zanardi, L.M., Young, M.C., Eberlin, M.N., Hadad, R., Pfenning, L.H., Costa-Neto, C.M., Castro-Gamboa, I., Da Silva Bolzani, V., and Araújo, Â.R. (2006). Cadinane sesquiterpenoids of Phomopsis cassiae, an endophytic fungus associated with Cassia spectabilis (Leguminosae). Phytochemistry Sep 1 67 (17): 1964–1969.

64 64 Abdallah, R.A., Steel, C., Garagounis, C., Nefzi, A., Jabnoun-Khiareddine, H., Papadopoulou, K.K., and Daami-Remadi, M. (2017). Involvement of lipopeptide antibiotics and chitinase genes and induction of host defense in suppression of Fusarium wilt by endophytic Bacillus spp. in tomato. Crop Protection Sep 1 99: 45–58.

65 65 Munjal, V., Nadakkakath, A.V., Sheoran, N., Kundu, A., Venugopal, V., Subaharan, K., Rajamma, S., Eapen, S.J., and Kumar, A. (2016). Genotyping and identification of broad-spectrum antimicrobial volatiles in black pepper root endophytic biocontrol agent, Bacillus megaterium BP17. Biological Control Jan 1 92: 66–76.

66 66 Huang, Y., Xu, C., Ma, L., Zhang, K., Duan, C., and Mo, M. (2010). Characterisation of volatiles produced from Bacillus megaterium YFM3. 25 and their nematicidal activity against Meloidogyne incognita. European Journal of Plant Pathology Mar 126 (3): 417–422.

67 67 Athukorala, S.N., Fernando, W.D., Rashid, K.Y., and De Kievit, T. (2010). The role of volatile and non-volatile antibiotics produced by Pseudomonas chlororaphis strain PA23 in its root colonization and control of Sclerotinia sclerotiorum. Biocontrol Science and Technology Jan 1 20 (8): 875–890.

68 68 Kai, M., Haustein, M., Molina, F., Petri, A., Scholz, B., and Piechulla, B. (2009). Bacterial volatiles and their action potential. Applied Microbiology and Biotechnology Jan 81 (6): 1001–1012.

69 69 Pieterse, C.M., Van Der Does, D., Zamioudis, C., Leon-Reyes, A., and Van Wees, S.C. (2012). Hormonal modulation of plant immunity. Annual Review of Cell and Developmental Biology Nov 10 (28): 489–521.

70 70 Niu, D.D., Liu, H.X., Jiang, C.H., Wang, Y.P., Wang, Q.Y., Jin, H.L., and Guo, J.H. (2011). The plant growth-promoting rhizobacterium Bacillus cereus AR156 induces systemic resistance in Arabidopsis thaliana by simultaneously activating salicylate and jasmonate/ethylene-dependent signaling pathways. Molecular Plant–Microbe Interactions May 24 (5): 533–542.

71 71 Conn, V.M., Walker, A.R., and Franco, C.M. (2008). Endophytic actinobacteria induce defense pathways in Arabidopsis thaliana. Molecular Plant–Microbe Interactions Feb 21 (2): 208–218.

72 72 Bogner, C.W., Kariuki, G.M., Elashry, A., Sichtermann, G., Buch, A.K., Mishra, B., Thines, M., Grundler, F.M., and Schouten, A. (2016). Fungal root endophytes of tomato from Kenya and their nematode biocontrol potential. Mycological Progress Mar 1 15 (3): 30.

73 73 Su, L., Shen, Z., Ruan, Y., Tao, C., Chao, Y., Li, R., and Shen, Q. (2017). Isolation of antagonistic endophytes from banana roots against Meloidogyne javanica and their effects on soil nematode community. Frontiers in Microbiology Oct 26 (8): 2070.

74 74 Li, H., Zhao, J., Feng, H., Huang, L., and Kang, Z. (2013). Biological control of wheat stripe rust by an endophytic Bacillus subtilis strain E1R-j in greenhouse and field trials. Crop Protection Jan 1 43: 201–206.

75 75 Ho, Y.N., Chiang, H.M., Chao, C.P., Su, C.C., Hsu, H.F., Guo, C.T., Hsieh, J.L., and Huang, C.C. (2015). In planta biocontrol of soilborne Fusarium wilt of banana through a plant endophytic bacterium, Burkholderia cenocepacia 869T2. Plant and Soil Feb 387 (1): 295–306.

76 76 Sun, K., Xie, X.G., Lu, F., Zhang, F.M., Zhang, W., He, W., and Dai, C.C. (2021). Peanut preinoculation with a root endophyte induces plant resistance to soilborne pathogen Fusarium oxysporum via activation of salicylic acid-dependent signaling. Plant and Soil Jan 12: 1–6.

77 77 Xie, X.G., Zhao, Y.Y., Yang, Y., Lu, F., and Dai, C.C. (2020). Endophytic Fungus Alleviates Soil Sickness in Peanut Crops by Improving the Carbon Metabolism and Rhizosphere Bacterial Diversity. Microbial Ecology Jul 12: 1–3.

78 78 Yanni, Y.G. and Dazzo, F.B. (2010). Enhancement of rice production using endophytic strains of Rhizobium leguminosarum bv. Trifolii in Extensive Field Inoculation Trials within the Egypt Nile Delta. Plant and Soil. Nov 336 (1): 129–142.

79 79 Mercier, J. and Jiménez, J.I. (2004). Control of fungal decay of apples and peaches by the biofumigant fungus Muscodor albus. Postharvest Biology and Technology Jan 1 31 (1): 1–8.

80 80 Stinson, A.M., Zidack, N.K., Strobel, G.A., and Jacobsen, B.J. (2003). Mycofumigation with Muscodor albus and Muscodor roseus for control of seedling diseases of sugar beet and Verticillium wilt of eggplant. Plant Disease Nov 87 (11): 1349–1354.

81 81 Last, F.T. (1955). Seasonal incidence of Sporobolomyces on cereal leaves. Transactions of the British Mycological Society Sep 38 (3): 221–239.

82 82 Ruinen, J. (1956). Occurrence of Beijerinckia species in the ‘phyllosphere’. Nature Feb 4 177: 220–221.

83 83 Maignan, L., DeForce, E.A., Chafee, M.E., Murat Eren, A., and Simmons, S.L. (2014). Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities. mBio Jan 21 5 (1): 1–10.

84 84 Chaudhry, V., Runge, P., Sengupta, P., Doehlemann, G., Parker, J.E., and Kemen, E. (2021). Shaping the leaf microbiota: Plant–microbe–microbe interactions. Journal of Experimental Botany Jan 20 72 (1): 36–56.

85 85 Vacher, C., Hampe, A., Porté, A.J., Sauer, U., Compant, S., and Morris, C.E. (2016). The phyllosphere: Microbial jungle at the plant–climate interface. Annual Review of Ecology, Evolution, and Systematics Nov 1 47: 1–24.

86 86 Shakir, S., Zaidi, S.S., de Vries, F.T., and Mansoor, S. Plant genetic networks shaping phyllosphere microbial community. Trends in Genetics. 2020 Oct 6.

87 87 Carlos, A.R.P., Silvia, R., and Maria, M.Z. (2016). Microbial and functional diversity within the phyllosphere of Espeletia species in an Andean high-mountain ecosystem. Applied and Environmental Microbiology March 82 (6): 1807–1817.

88 88 Carlstrom, C.I., Field, C.M., Bortfeld-Miller, M., Müller, B., Sunagawa, S., and Vorholt, J.A. (2019). Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere. Nature Ecology & Evolution Oct 3 (10): 1445–1454.

89 89 Steven, W.K., Timothy, K.O., Holly, K.A., Stephen, P.H., Joseph, W., and Jessica, L.G. (2014). Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest. PNAS sep 23 111 (38): 13715–13720.

90 90 Delmotte, N., Claudia, K., Samuel, C., Gerd, I., Bernd, R., Ralph, S., Christian, V.M., and Julia, A.V. (2009). Community proteogenomics reveals insights into the physiology of phyllosphere bacteria. Proceedings of the National Academy of Sciences of the United States of America Sep 22 106 (38): 16428–16433.

91 91 Vorholt, J.A. (2012). Microbial life in the phyllosphere. Nature Reviews. Microbiology Dec 10 (12): 828–840.

92 92 Haefele, D.M. and Lindow, S.E. (1987). Flagellar motility confers epiphytic fitness advantages upon Pseudomonas syringae. Applied and Environmental Microbiology Oct 1 53 (10): 2528–2533.

93 93 Tao, C., Kinya, N., Xiaolin, W., Reza, S., Jin, X., Lingya, Y., Bradley, C.P., Li, M., James, K., Yu, C., Li, Z., Nian, W., Ertao, W., Xiu-Fang, X., and Sheng, Y.H. (2020). A plant genetic network for preventing dysbiosis in the phyllosphere. Nature Apr 8 580 (7805): 653–657.

94 94 Blin, K., Shaw, S., Steinke, K., Villebro, R., Ziemer, N., Lee, S.Y., Medema, M.H., and Weber, T. (2019). antiSMASH 5.0: Updates to the secondary metabolite genome mining pipeline. Nucleic Acids Research Apr 29 47 (1): 81–87.

95 95 Kawaguchi, K., Yurimoto, H., Oku, M., and Sakai, Y. (2011). Yeast methylotrophy and autophagy in a methanol-oscillating environment on growing Arabidopsis thaliana leaves. PLoS One Sep 26 6 (9): e25257.

96 96 Knief, C., Delmotte, N., Chaffron, S., Stark, M., Innerebner, G., Wassmann, R., Von Mering, C., and Vorholt, J.A. (2012). Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice. The ISME Journal Jul 6 (7): 1378–1390.

97 97 Boller, T. (1993). “Antimicrobial Functions of the Plant Hydrolases, Chitinase and ß-1,3-Glucanase,” in Mechanisms of Plant Defense Responses. Springer 2: 391–400.

98 98 Essghaier, B., Hedi, A., Halaoui, M.R., Boudabous, A., and Sadfi-Zouaoui, N. (2012). In vivo and in vitro evaluation of antifungal activities from a halotolerant Bacillus subtilis strain J9. African Journal of Microbiology May 23 6 (19): 4073–4083.

99 99 Urquhart, E.J. and Punja, Z.K. (2002). Hydrolytic enzymes and antifungal compounds produced by Tilletiopsis species, phyllosphere yeasts that are antagonists of powdery mildew fungi. Canadian Journal of Microbiology Mar 1 48 (3): 219–229.

100 100 Muhammad, S., Nicole, M., Zahida, H.P., and Milton, B.T. (2017). Microbial interactions in the phyllosphere increase plant performance under herbivore biotic stress. Frontiers in Microbiology Jan 20 8 (41): 1–10.

101 101 Eitzen, K., Sengupta, P., Kroll, S., Kemen, E., and Doehlemann, G. (2020). An antagonistic driver of the microbial phyllosphere suppresses infection of Arabidopsis thaliana by the oomycete pathogen Albugo laibachii via a secreted hydrolase. bioRxiv Apr 21: 1–36.

102 102 Lopez-Mondejar, R., Ros, M., and Pascual, J.A. (2011). Mycoparasitism-related genes expression of Trichoderma harzianum isolates to evaluate their efficacy as biological control agent. Biological Control Jan 56 (1): 59–66.

103 103 Volks, B. and May, R. (2001). Biological control of Pseudomonas syringae PV. glycine by epiphytic bacteria under field conditions. Microbial Ecology Feb 41: 132–139.

104 104 Simionato, A.S., Navarro, M.O.P., de Jesus, M.L.A, Barazetti, A.R., da Silva, C.S., and Simoes, G.C. (2017). The effect of phenazine-1-carboxylic acid on mycelial growth of Botrytis cinerea produced by Pseudomonas aeruginosa LV strain. Front Microbiology Jun 14 8 (1102): 1–9.

105 105 Chin-A-Woeng, T.F.C.Bloemberg, G.V., and Lugtenberg, B.J.J. (2003). Phenazines and their role in biocontrol by Pseudomonas bacteria. The New Phytologist Mar 3 157: 503–523.

106 106 Yasmin, S., Hafeez, F.Y., Mirza, M.S., Rasul, M., Arshad, H.M.I., Zubair, M., and Iqbal, M. (2017). Biocontrol of Bacterial Leaf Blight of rice and profiling of secondary metabolites produced by rhizospheric Pseudomonas aeruginosa BRp3. Front. Microbiology Sep 26 8 (1895): 1–23.

107 107 Noor, A.I., Abdiad, A.N., and Aris, T.W. (2016). Rice phyllosphere actinomycetes as biocontrol agent of bacterial leaf blight disease on rice. Asian Journal of Plant Pathology Mar 15 10 (1-2): 1–8.

108 108 Vogel, C., Bodenhausen, N., Gruissem, W., and Vorholt, J.A. (2016). The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection with impact on plant health. New Phytologist Oct 212 (1): 192–207.

109 109 Ryffel, F., Helfrich, E.J., Kiefer, P., Peyriga, L., Portais, J.C., Piel, J., and Vorholt, J.A. (2016). Metabolic footprint of epiphytic bacteria on Arabidopsis thaliana leaves. The ISME Journal Mar 10 (3): 632–643.

110 110 Lee, G.H. and Ryu, C.M. (2016). Spraying of leaf-colonizing Bacillus amyloliquefaciens protects pepper from Cucumber mosaic virus. Plant Disease Oct 14 100 (10): 2099–2105.

111 111 Savary, S., Willocquet, L., Pethybridge, S.J., Esker, P., McRoberts, N., and Nelson, A. (2019). The global burden of pathogens and pests on major food crops. Nature Ecology & Evolution Mar 3 (3): 430–439.

112 112 Jeffrey, B.J., Gary, E.V., Fanny, B.I., Aleksa, O., Mine, H.W., Lee, E.J., Botond, B., Jason, C.H., and Timur, M. (2012). Considerations for using bacteriophages for plant disease control. Bacteriophage. Oct 1 2 (4): 208–214.

113 113 Marie, L., Wenke, S., Dieter, V., Tom, E., Babette, M., Els, P., Roeland, S., and Sarah, L. (2020). Modes of Action of Microbial Biocontrol in the Phyllosphere. Frontiers in Microbiology July 14 11 (1610): 1–18.

114 114 Qin, C., Tao, J., Liu, T., Liu, Y., Xiao, N., Li, T., Gu, Y., and Meng, D. (2019). Responses of phyllosphere microbiota and plant health to application of two different biocontrol agents. AMB Express Mar 28 9 (42): 1–13.

115 115 Hao, W.N., Li, H., Hu, M.Y., Yang, L., and Rizwan-ul-Haq, M. (2011). Integrated control of citrus green and blue mold and sour rot by Bacillus amyloliquefaciens in combination with tea saponin. Postharvest Biology and Technology 59: 316–323.

116 116 Card, S.D., Walter, M., Jaspers, M.V., Sztejnberg, A., and Stewart, A. (2009). Targeted selection of antagonistic microorganisms for control of Botrytis cinerea of strawberry in New Zealand. Australas Plant Pathology Mar 38 (2): 183–192.

117 117 Fu, G., Huang, S., Ye, Y., Wu, Y., Cen, Z., and Lin, S. (2010). Characterization of a bacterial biocontrol strain B106 and its efficacy on controlling banana leaf spot and post-harvest anthracnose diseases. Biological Control 55 (1): 1–10.

118 118 Alexander, B.J.R. and Stewart, A. (2001). Glasshouse screening for biological control agents of Phytophthora cactorum on apple (Malus domestica). New Zealand Journal of Crop and Horticultural Science 29 (3): 159–169.

119 119 Abraham, A., Philip, S., Jacob, C.K., and Jayachandran, K. (2013). Novel bacterial endophytes from Hevea brasiliensis as biocontrol agent against Phytophthora leaf fall disease. BioControl Oct 58 (5): 675–684.

120 120 Hoitink, H.A. and Boehm, M.J. (1999). Biocontrol within the context of soil microbial communities: A substrate-dependent phenomenon. Annual Review of Phytopathology Sep 37 (1): 427–446.

121 121 Fernando, W.D., Ramarathnam, R., Krishnamoorthy, A.S., and Savchuk, S.C. (2005). Identification and use of potential bacterial organic antifungal volatiles in biocontrol. Soil Biology & Biochemistry May 1 37 (5): 955–964.

122 122 Mercier, J. and Manker, D.C. (2005). Biocontrol of soilborne diseases and plant growth enhancement in greenhouse soilless mix by the volatile-producing fungus Muscodor albus. Crop Protection Apr 1 24 (4): 355–362.

123 123 Zheng, M., Shi, J., Shi, J., Wang, Q., and Li, Y. (2013). Antimicrobial effects of volatiles produced by two antagonistic Bacillus strains on the anthracnose pathogen in postharvest mangos. Biological Control May 1 65 (2): 200–206.

124 124 Wan, M., Li, G., Zhang, J., Jiang, D., and Huang, H.C. (2008). Effect of volatile substances of Streptomyces platensis F-1 on control of plant fungal diseases. Biological Control Sep 1 46 (3): 552–559.