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George Acquaah
Principles of Plant Genetics and Breeding
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Вернуться на страницу книги Principles of Plant Genetics and Breeding
Оглавление
Страница 1
Table of Contents
List of Tables
List of Illustrations
Guide
Pages
Страница 7
Principles of Plant Genetics and Breeding
Страница 9
Страница 10
Preface
Acknowledgments
Industry highlights boxes
Industry highlights boxes: Authors
Section 1 Overview and historical perspectives
1 Introduction Purpose and expected outcomes
1.1 What is plant breeding?
1.2 The goals of plant breeding
1.3 The concept of genetic manipulation of plant attributes
1.4 Why breed plants?
1.4.1 Addressing world food and feed quality needs
1.4.2 Addressing food supply needs for a growing world population
1.4.3 Need to adapt plants to environmental stresses
1.4.4 Need to adapt crops to specific production systems
1.4.5 Developing new horticultural plant varieties
1.4.6 Satisfying industrial and other end‐use requirements
1.5 Overview of the basic steps in plant breeding
1.6 How have plant breeding objectives changed over the years?
1.7 The art and science of plant breeding
1.7.1 Art and the concept of the “breeder's eye”
1.7.2 The scientific disciplines and technologies of plant breeding
1.8 Training of plant breeders
1.9 The plant breeding industry
1.9.1 Private sector plant breeding
Industry highlights
Box 1.1 Training game changers in plant breeding at the West Africa Centre for Crop Improvement (WACCI) in Africa for Africa
Genesis of WACCI
Overall goal and objectives
Student recruitment and PhD program structure
Quality assurance
Funding
Student research and breeding programs
WACCI graduates' research and breeding programs
Breeding programs at WACCI
WACCI maize breeding program
Visibility and impact of WACCI
Acknowledgments
1.9.2 Public sector plant breeding The USA experience
The UK experience
Crop research and development in European Community (EC) countries
International plant breeding
1.9.3 Public sector versus private sector breeding
1.10 Duration and cost of plant breeding programs
1.11 The future of plant breeding in society
1.12 The organization of the book
Key references and suggested reading
Internet resources for reference
Outcomes assessment Part A
Part B
Part C
Note
2 History of plant breeding Purpose and expected outcomes
2.1 Origins of agriculture and plant breeding
2.2 The “unknown breeder”
2.2.1 The “farmer‐breeder”
2.2.2 The “no name” breeder
2.3 Plant manipulation efforts by the early civilizations
2.4 Early pioneers of the theories and practices of modern plant breeding
2.5 Later pioneers and trailblazers
2.6 History of plant breeding technologies/techniques
2.6.1 Technologies/techniques associated with creation of variation
Artificial pollination
Hybridization
Tissue culture/embryo culture
Chromosome doubling
Bridge cross
Protoplast fusion
Hybrid seed technology/technique
Seedlessness technique
Mutagenesis
rDNA technology
Important modern milestones associated with the creation of variation
2.6.2 Technologies/techniques for selection
Selection (breeding) schemes
Molecular marker technology
Gene mapping
Genomic selection
2.7 Genome‐wide approaches to crop improvement
2.8 Bioinformatics and OMICs technologies in crop improvement
2.9 Summary of changes in plant breeding over the last half century
2.9.1 Changes in the science of breeding
2.9.2 Changes in laws and policies
2.9.3 Changes in breeding objectives
2.9.4 Changes in the creation of variability
2.9.5 Changes in identifying and evaluating genetic variability
2.9.6 Selecting and evaluating superior genotypes
2.10 Achievements of modern plant breeders
Key references and suggested reading
Internet resources
Outcomes assessment Part A
Part B
Part C
Section 2 Population and quantitative genetic principles
3 Introduction to concepts of population genetics Purpose and expected outcomes
3.1 Concepts of a population and gene pool
3.1.1 Definitions
3.1.2 Mathematical model of a gene pool
Calculating gene frequency
Hardy‐Weinberg equilibrium
An example of a breeding application of Hardy‐Weinberg equilibrium
3.2 Issues arising from Hardy‐Weinberg equilibrium
3.2.1 Issue of population size
3.2.2 Issue of multiple loci
3.3 Factors affecting changes in gene frequency
3.3.1 Migration
3.3.2 Mutation
3.3.3 Selection
3.4 Frequency dependent selection
3.5 Summary of key plant breeding applications
3.6 Modes of selection
3.6.1 Stabilizing selection
3.6.2 Disruptive selection
3.6.3 Directional selection
3.7 Effect of mating system on selection
3.7.1 Random mating
3.7.2 Non‐random mating
Genetic assortative mating
Pheotypic assortative mating
Disassortative mating
3.8 Concept of inbreeding
3.9 Inbreeding and its implications in plant breeding
3.9.1 Consequences
3.9.2 Applications
3.9.3 Mating systems that promote inbreeding
3.10 Concept of population improvement
3.11 Types
3.11.1 Methods of population improvement
Key references and suggested reading
Internet resources
Outcomes assessment Part A
Part B
Part C
4 Introduction to quantitative genetics Purpose and expected outcomes
4.1 What is quantitative genetics?
4.2 Quantitative traits
4.2.1 Qualitative genetics versus quantitative genetics
4.2.2 The environment and quantitative variation
4.2.3 Polygenes and polygenic inheritance
What are polygenes?
Number of genes controlling a quantitative trait
Modifying genes
4.2.4 Decision‐making in breeding based on biometrical genetics
What is the best cultivar to breed?
What selection method would be most effective for improvement of the trait?
Should selection be on single traits or multiple traits?
4.2.5 Gene action
Additive gene action
Dominance gene action
Overdominance gene action
Epistasis gene action
4.2.6 Gene action and plant breeding
4.2.7 Gene action and methods of breeding
Self‐pollinated species
Cross‐pollinated species
Impact of breeding method on genetic variance
Estimating gene action
Factors affecting gene action
4.2.8 Variance components of a quantitative trait
4.2.9 The concept of heritability
Definition
Types of heritability
Factors affecting heritability estimates
4.2.10 Methods of computation
Applications of heritability
Evaluating parental germplasm
4.2.11 Response to selection in breeding
Prediction of response in one generation – genetic advance due to selection
4.2.12 Concept of correlated response
4.2.13 Selection for multiple traits
Tandem selection
Independent curling
Index selection
4.2.14 Concept of intuitive index
4.2.15 The concept of general worth
4.2.16 Nature of breeding characteristics and their levels of expression
4.2.17 Early generation testing
4.2.18 Concept of combining ability
4.2.19 Mating designs
Hybrid crosses
Mating designs for random mating populations
Biparental mating (or pair crosses)
Polycross
North carolina design I
North carolina design II
North carolina design III
Diallele cross
Comparative evaluation of mating designs
4.3 The genetic architecture of quantitative traits
4.3.1 Effects of QTL on phenotype
4.3.2 Molecular basis of quantitative variation
4.4 Systems genetics
4.5 Predicting breeding value
4.6 Genomic selection (genome‐wide selection)
4.7 Mapping quantitative traits
Key references and suggested reading
Internet resources
Outcomes assessment Part A
Part B
Part C
5 Introductionto reproduction Purpose and expected outcomes
5.1 Importance of mode of reproduction to plant breeding
5.2 Overview of reproductive options in plants
5.3 Types of reproduction
5.4 Sexual reproduction
5.4.1 Sexual lifecycle of a plant (alternation of generation)
5.4.2 Duration of plant growth cycles
5.4.3 The flower structure
5.4.4 General reproductive morphology
5.4.5 Types of flowers
5.4.6 Gametogenesis
5.4.7 Pollination and fertilization
5.5 What is autogamy?
5.5.1 Mechanisms that promote autogamy
5.5.2 Mechanisms that prevent autogamy
Self‐incompatibility
Self‐incompatibility systems
Changing the incompatibility reaction
Plant breeding implications of self‐incompatibility
Male sterility
Exploiting male sterility in breeding
Dichogamy
5.5.3 Genetic and breeding implications of autogamy
Industry highlight boxes
Introgression breeding on tomatoes for resistance to powdery mildew
Tomato and its wild relatives
Introgression breeding
An example of introgression breeding
Search for resistance in wild relatives of tomato
Inheritance of the resistance
Generation of near isogenic lines
Releasing NILs to companies for production of resistant cultivars
References
5.6 Genotype conversion programs
5.7 Artificial pollination control techniques
5.8 What is allogamy?
5.8.1 Mechanisms that favor allogamy
Monoecy
Dioecy
5.8.2 Genetic and breeding implications of allogamy
Inbreeding depression
5.9 Mendelian concepts relating to the reproductive system
5.9.1 Mendelian postulates
5.9.2 Concept of genotype and phenotype
5.9.3 Predicting genotype and phenotype
5.9.4 Distinguishing between heterozygous and homozygous individuals
5.10 Complex inheritance
5.10.1 Incomplete dominance and codominance
5.10.2 Multiple alleles of the same gene
5.10.3 Multiple genes
5.10.4 Polygenic inheritance
5.10.5 Concept of gene interaction and modified Mendelian ratios
5.10.6 Pleiotropy
Key references and suggested reading
Outcomes assessment Part A
Part B
Part C
6 Hybridization Purpose and expected outcomes
6.1 Concept of gene transfer and hybridization
6.2 Applications of crossing in plant breeding
6.3 Artificial hybridization
6.4 Artificial pollination control techniques
6.5 Flower and flowering issues in hybridization
6.5.1 Flower health and induction
6.5.2 Synchronization of flowering
6.5.3 Selecting female parents and suitable flowers
6.6 Emasculation
6.6.1 Factors to consider for success
6.6.2 Methods of emasculation
Direct anther emasculation
Indirect anther emasculation
6.7 Pollination
6.7.1 Pollen collection and storage
6.7.2 Application of pollen
6.7.3 Tagging after pollination
6.8 Number of F1 crosses to make
6.9 Genetic issues in hybridization
6.9.1 Immediate effect
6.9.2 Subsequent effect
6.9.3 Gene recombination in the F
2
6.10 Types of populations generated through hybridization
6.10.1 Divergent crossing
6.10.2 Convergent crosses
6.11 Wide crosses
Industry highlights
Maize and Tripsacum : experiments in intergeneric hybridization and the transfer of apomixis
A historical review
Generating maize × Tripsacum hybrids
Gene transfer from Tripsacum to maize
Potential pathways for
Tripsacum
introgression
The 28→38→20 Non‐apomictic pathway
The 28→38 apomictic transfer pathway
The 46→56→38 non‐apomictic pathway
The 46→56→38 apomictic transfer pathway
Transfer of apomixis from Tripsacum to maize
Pitfalls in the development of an apomictic maize
FDR in apomictic maize‐ Tripsacum hybrids
Potential advantages of apomictic hybrid corn
References
6.11.1 Objectives of wide crosses
6.11.2 Selected success with wide crosses
6.12 Issue of reproductive isolation barriers
6.13 Overcoming challenges of reproductive barriers
6.14 Bridge crosses
Key references and suggested reading
Internet resources
Outcomes assessment Part A
Part B
Part C
7 Clonal propagation and
in vitro
culture Purpose and expected outcomes
7.1 What is a clone?
7.2 Clones, inbred lines, and pure lines
7.3 Categories of clonally propagated species based on economic use
7.4 Categories of clonally propagated species for breeding purposes
7.5 Types of clonal propagation
7.6 Importance of clonal propagation in plant breeding
7.7 Breeding implications of clonal propagation
7.8 Genetic Issues in Clonal Breeding
7.9 Breeding approaches used in clonal species
7.9.1 Planned introduction
7.9.2 Clonal selection
Purifying an infected cultivar
Clonal selection for cultivar development
7.9.3 Crossing with clonal selection
7.9.4 Mutation breeding
7.9.5 Breeding implications, advantages, and limitations of clonal propagation
7.10 Natural propagation
7.11 In
vitro
culture
Industry highlights use of comparative molecular markers and plant tissue culture techniques for genetic diversity assessment and rapid production of
Musa
species at Bowie State University
Introduction
Genetic diversity and population structure of Musa species using CDDP, ISSR, and SCoT markers
Conserved DNA‐derived polymorphism (CDDP), inter‐simple sequence repeat (ISSR) and start codon targeted (SCoT) markers
Macropropagation and micropropagation of Musa accessions
References
7.12 Micropropagation
7.12.1 Axillary shoot production
7.12.2 Adventitious shoot production
7.12.3 Somatic adventitious embryogenesis
7.13 Concept of totipotency
7.14 Somaclonal variation
7.15 Apomixis
7.15.1 Occurrence in nature
7.15.2 Benefits of apomixis
Benefits to the plant breeder
Benefits to the producer
Impact on the environment
7.15.3 Mechanisms of apomixis
Apospory
Diplospory
Adventitious embryo
Parthenogenesis
7.16 Other tissue culture applications
7.16.1 Synthetic seed
7.16.2 Limitations to commercialization of synthetic seed technology
7.16.3 Production of virus‐free plants
7.16.4 Applications in wide crosses
Embryo rescue
Somatic hybridization
7.17 Production of haploids
7.17.1 Anther culture
Applications
Limitations
7.17.2 Ovule/Ovary culture
7.17.3 Haploids from wide crosses
7.17.4 Doubled haploids
Key features
Applications
Procedure
Advantages and disadvantages
Genetic issues
7.18 Germplasm preservation
Key references and suggested reading
Internet resources
Outcomes assessment Part A
Part B
Part C
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